Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   A2I65_RS00425 Genome accession   NZ_CP015532
Coordinates   92316..93665 (-) Length   449 a.a.
NCBI ID   WP_253720356.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.212     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87316..98665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I65_RS13035 - 87961..88125 (+) 165 WP_366516048.1 hypothetical protein -
  A2I65_RS13040 - 88164..88481 (+) 318 Protein_78 phosphoglucomutase -
  A2I65_RS00400 (A2I65_00385) - 88512..88729 (+) 218 Protein_79 type I restriction enzyme endonuclease domain-containing protein -
  A2I65_RS00405 (A2I65_00390) - 88925..89437 (-) 513 WP_253720348.1 DUF1643 domain-containing protein -
  A2I65_RS00410 (A2I65_00395) - 89457..89768 (-) 312 WP_253720350.1 DUF960 family protein -
  A2I65_RS00415 (A2I65_00400) - 89864..90202 (-) 339 WP_253720352.1 SAUGI family uracil-DNA glycosylase inhibitor -
  A2I65_RS00420 (A2I65_00405) ccrB 90676..92304 (-) 1629 WP_253720354.1 recombinase family protein Machinery gene
  A2I65_RS00425 (A2I65_00410) ccrA 92316..93665 (-) 1350 WP_253720356.1 recombinase family protein Machinery gene
  A2I65_RS00430 (A2I65_00415) - 93857..94132 (-) 276 WP_046099761.1 hypothetical protein -
  A2I65_RS00435 (A2I65_00420) - 94201..95988 (-) 1788 WP_253720357.1 DUF927 domain-containing protein -
  A2I65_RS00440 (A2I65_00425) - 95988..96281 (-) 294 WP_253720359.1 DUF1413 domain-containing protein -
  A2I65_RS00445 (A2I65_00430) - 96418..97468 (+) 1051 Protein_88 ACP synthase -
  A2I65_RS00450 - 97617..97913 (+) 297 WP_253720360.1 hypothetical protein -
  A2I65_RS00455 - 98063..98293 (+) 231 WP_253720361.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52267.12 Da        Isoelectric Point: 10.0720

>NTDB_id=180425 A2I65_RS00425 WP_253720356.1 92316..93665(-) (ccrA) [Staphylococcus carnosus strain TMW 2.212]
MKQAIGYLRQSTTKQQSLPAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYQYH
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLETDDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCGSTLTNMTIRKKNHALRYYVCSRNMNASHFVCEFKGINAPKLETQVLTT
CQDFFQNQQLYLKINDVIQKRIKKQRALETRSTLTQEQLIDKLAKGAIDAETFRKQSQSLLQQSKPTLSINEQQIQRSFE
NVIQQRFTLNMLYPYIDEIHISKNKSLVGIYFKNEPLNIVNQATQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=180425 A2I65_RS00425 WP_253720356.1 92316..93665(-) (ccrA) [Staphylococcus carnosus strain TMW 2.212]
ATGAAACAAGCAATTGGCTATTTACGTCAAAGTACAACTAAGCAACAATCACTTCCGGCACAGAAACAAGCCATCAAGAC
ATTGGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTATGTCAAAAATACCATGTTCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCCGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCAATATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAATAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAACTGATGATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGCCCTTATTGCGGGTCAACCCTTACCAATATGACAATTAGAAAAAAGAATCATGCATTACGTTACTATGTCTGTTCTC
GAAATATGAATGCATCTCATTTTGTCTGTGAATTCAAAGGGATTAATGCGCCAAAACTAGAAACTCAAGTCTTAACTACA
TGTCAGGACTTCTTTCAAAATCAACAACTTTACTTAAAAATCAACGATGTAATTCAAAAACGGATCAAAAAACAAAGGGC
CCTAGAAACTAGGAGCACACTTACACAAGAACAATTGATAGATAAATTAGCTAAAGGAGCCATTGATGCAGAAACGTTCA
GAAAACAATCTCAATCGTTACTTCAACAATCAAAACCAACACTATCAATAAATGAGCAACAAATTCAAAGATCATTTGAA
AATGTAATTCAACAACGCTTCACGTTAAACATGTTATACCCATATATTGATGAAATTCATATTTCTAAAAACAAAAGCCT
TGTGGGAATCTATTTCAAAAATGAACCGCTAAACATTGTAAACCAAGCTACGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(170-249)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

87.305

100

0.873
  ccrA Staphylococcus aureus N315

74.61

100

0.746

Multiple sequence alignment