Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   A2I65_RS00420 Genome accession   NZ_CP015532
Coordinates   90676..92304 (-) Length   542 a.a.
NCBI ID   WP_253720354.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.212     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 85676..97304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I65_RS00390 (A2I65_00380) galU 87076..87942 (+) 867 WP_253720346.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  A2I65_RS13035 - 87961..88125 (+) 165 WP_366516048.1 hypothetical protein -
  A2I65_RS13040 - 88164..88481 (+) 318 Protein_78 phosphoglucomutase -
  A2I65_RS00400 (A2I65_00385) - 88512..88729 (+) 218 Protein_79 type I restriction enzyme endonuclease domain-containing protein -
  A2I65_RS00405 (A2I65_00390) - 88925..89437 (-) 513 WP_253720348.1 DUF1643 domain-containing protein -
  A2I65_RS00410 (A2I65_00395) - 89457..89768 (-) 312 WP_253720350.1 DUF960 family protein -
  A2I65_RS00415 (A2I65_00400) - 89864..90202 (-) 339 WP_253720352.1 SAUGI family uracil-DNA glycosylase inhibitor -
  A2I65_RS00420 (A2I65_00405) ccrB 90676..92304 (-) 1629 WP_253720354.1 recombinase family protein Machinery gene
  A2I65_RS00425 (A2I65_00410) ccrA 92316..93665 (-) 1350 WP_253720356.1 recombinase family protein Machinery gene
  A2I65_RS00430 (A2I65_00415) - 93857..94132 (-) 276 WP_046099761.1 hypothetical protein -
  A2I65_RS00435 (A2I65_00420) - 94201..95988 (-) 1788 WP_253720357.1 DUF927 domain-containing protein -
  A2I65_RS00440 (A2I65_00425) - 95988..96281 (-) 294 WP_253720359.1 DUF1413 domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62226.35 Da        Isoelectric Point: 9.8551

>NTDB_id=180424 A2I65_RS00420 WP_253720354.1 90676..92304(-) (ccrB) [Staphylococcus carnosus strain TMW 2.212]
MKNMKRKSVGCYVRVSTISQDIDKFSINGQITQIKEYCQFHGYEVFDIYADRGVSGKTMNRPELQRMLKDAKEGKLDCVM
IYKTSRLARNTSDLLTIVEGLHKQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAFMGQLRRSQEGYYQGN
LPLAYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIKFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSAIKPTIHQYEKQLNDITNQINQLKQQQNQEKPSYDTKQISIILRHIFQNIESMEKSQLK
ALYLTVIDRIDIRKDGSHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=180424 A2I65_RS00420 WP_253720354.1 90676..92304(-) (ccrB) [Staphylococcus carnosus strain TMW 2.212]
ATGAAAAATATGAAAAGAAAATCTGTAGGATGTTATGTTAGAGTTTCAACAATTTCTCAAGACATTGATAAATTTAGTAT
TAATGGTCAAATTACACAAATAAAGGAATATTGCCAATTCCACGGATATGAAGTTTTTGATATTTACGCTGACCGTGGTG
TTTCAGGAAAAACAATGAATCGCCCTGAGTTACAACGCATGTTAAAAGATGCTAAAGAAGGTAAATTGGATTGTGTTATG
ATATATAAAACAAGTCGTTTAGCGCGTAACACATCTGACCTGTTAACAATTGTTGAAGGATTACACAAGCAAAATGTTGA
ATTCTTTAGCTTGTCTGAAAACATGAAATTTGACTCAAATAGCGGAAAATTACTCTTACAAATTTTAGCTTCCTTCTCTG
AATTTGAAAGGAATAACATCGCCGAGGGAGCATTTATGGGGCAGTTGAGAAGGTCTCAAGAAGGCTATTATCAGGGCAAT
TTACCGTTAGCTTATGATAAAATACCTGACAGTAAACATGAACTCATGATTAACCAACATGAAGCCAATATTGTGAAATA
TATTTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCACAAAGGCTATGTGACTAAAA
AAGGTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATTAAATTCGCGAAA
TACAAAGATTGGAACGATAAACGACGTAAAGGATTAAATGATAAGCCAGTAATCGCCGAAGGCAAACACACCCCTATTAT
TAGTCAATCATTATGGGATAAAGTGCAAGCACGTAAGAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGGCTGCGAGTAACACCACAAACACACTTAAAGAT
GGCACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCAATCAAACCAACCAT
TCATCAATATGAAAAACAACTCAATGACATTACAAACCAAATTAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATATCCATTATCTTACGTCATATATTTCAAAACATAGAATCAATGGAAAAATCACAGCTCAAA
GCATTATACCTTACGGTCATTGATCGTATTGATATTCGTAAAGATGGTAGTCATAAAAAGCAGTTCTATGTCACACTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.996

100

0.81

Multiple sequence alignment