Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   A2I65_RS00285 Genome accession   NZ_CP015532
Coordinates   65965..67314 (-) Length   449 a.a.
NCBI ID   WP_065865881.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.212     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60965..72314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I65_RS00255 (A2I65_00250) - 61579..62064 (-) 486 WP_253720328.1 hypothetical protein -
  A2I65_RS00260 (A2I65_00255) - 62164..62445 (-) 282 WP_070038571.1 hypothetical protein -
  A2I65_RS00265 (A2I65_00260) - 62578..63084 (-) 507 WP_070038568.1 DUF1643 domain-containing protein -
  A2I65_RS00270 (A2I65_00265) - 63098..63409 (-) 312 WP_011302036.1 DUF960 family protein -
  A2I65_RS00275 (A2I65_00270) - 63505..63843 (-) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  A2I65_RS00280 (A2I65_00275) ccrB 64317..65945 (-) 1629 WP_253720330.1 recombinase family protein Machinery gene
  A2I65_RS00285 (A2I65_00280) ccrA 65965..67314 (-) 1350 WP_065865881.1 recombinase family protein Machinery gene
  A2I65_RS00290 (A2I65_00285) - 67485..67748 (-) 264 WP_253720332.1 hypothetical protein -
  A2I65_RS00295 (A2I65_00290) - 67814..69604 (-) 1791 WP_253720333.1 DUF927 domain-containing protein -
  A2I65_RS00300 (A2I65_00295) - 69604..69849 (-) 246 WP_071331185.1 hypothetical protein -
  A2I65_RS00305 (A2I65_00300) - 69987..71030 (+) 1044 WP_253720334.1 ACP synthase -
  A2I65_RS00310 - 71104..71301 (+) 198 WP_108909057.1 ATP-binding protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52085.12 Da        Isoelectric Point: 10.1638

>NTDB_id=180423 A2I65_RS00285 WP_065865881.1 65965..67314(-) (ccrA) [Staphylococcus carnosus strain TMW 2.212]
MKQAIGYLRQSTLKQQSLSAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLIKLCQQYNVDILSVNDGYFDLNKSFDRLKLNIFISLAELESNNIGEQVSNGIKEKARQGKLITTHAPFGYHYY
KGTFVINPVEAQTVTAVFKYYLQGYGYKKIAQYLEKDNKLINRKPYQVRNIIMNPNYCGRVNNKYGTFDNMFPFIISKSV
YKDAQAIRVNKQVQRTPSANLLKQKIKCPCCDSTLTNMTIRKKEHTLRYYVCPKNMNESRFVCSFKGINAQELEVQVLAT
CQNFFQNQQLYSKINNTIHQRLKKQRVIEAKSMLTQEQLIDKLAKGMIDAETFRNQSQSVLQKRKIISSISDTQLQTSLQ
NVIQQSFTLNMLYPYIDEIRITKNKVLVGIYFKNEPLNIVNQTTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=180423 A2I65_RS00285 WP_065865881.1 65965..67314(-) (ccrA) [Staphylococcus carnosus strain TMW 2.212]
ATGAAACAAGCAATAGGTTATCTACGTCAAAGTACACTCAAACAACAATCACTCTCAGCCCAGAAACAAACCATCAAGGC
ATTAGCCGAAAAGCATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGAAACGGTT
ACCAGCAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGTTATCGTCTGAATCGACTTCATCGTAAT
TTGAAAAATGCGCTAAAATTAATTAAATTATGCCAGCAGTACAATGTAGATATCTTGAGTGTTAACGATGGCTATTTTGA
CTTAAACAAATCATTTGATCGTCTAAAACTCAATATCTTCATTTCATTAGCTGAACTTGAGTCAAATAATATTGGTGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCACGTCAAGGTAAACTGATTACCACACATGCACCTTTTGGATATCATTATTAT
AAAGGCACATTTGTAATCAACCCAGTAGAAGCACAAACGGTGACTGCAGTATTCAAATACTATCTTCAAGGGTATGGTTA
CAAAAAGATTGCACAATATTTGGAAAAAGATAATAAGTTAATCAACCGAAAACCATATCAAGTACGTAACATTATTATGA
ACCCTAATTACTGTGGACGTGTGAATAACAAATACGGCACCTTTGATAATATGTTCCCATTTATTATCAGTAAATCAGTG
TATAAAGATGCTCAAGCAATACGAGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTGTTGTGACTCAACGCTGACAAATATGACGATAAGAAAAAAAGAACATACATTGCGCTATTATGTTTGTCCTA
AAAATATGAATGAATCTCGCTTTGTCTGTTCATTCAAAGGGATAAATGCACAAGAATTAGAAGTTCAAGTCTTAGCAACA
TGTCAGAACTTCTTTCAAAACCAACAGCTCTATTCAAAAATTAATAATACGATTCATCAACGCCTCAAAAAACAAAGAGT
GATAGAAGCTAAAAGTATGCTAACTCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTCA
GGAATCAGTCTCAATCAGTGCTTCAAAAGCGCAAAATCATATCCTCAATAAGTGATACTCAGTTGCAAACGTCACTACAA
AATGTGATACAGCAAAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCGCATTACTAAAAACAAAGTCCT
TGTTGGGATCTATTTCAAAAATGAACCATTGAACATTGTGAACCAAACCACGCAATCATCGATTGCCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(168-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

78.396

100

0.784
  ccrA Staphylococcus aureus N315

71.492

100

0.715

Multiple sequence alignment