Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   A2I65_RS00280 Genome accession   NZ_CP015532
Coordinates   64317..65945 (-) Length   542 a.a.
NCBI ID   WP_253720330.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.212     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59317..70945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I65_RS00250 (A2I65_00245) - 60208..61377 (+) 1170 WP_253720326.1 restriction endonuclease subunit S -
  A2I65_RS00255 (A2I65_00250) - 61579..62064 (-) 486 WP_253720328.1 hypothetical protein -
  A2I65_RS00260 (A2I65_00255) - 62164..62445 (-) 282 WP_070038571.1 hypothetical protein -
  A2I65_RS00265 (A2I65_00260) - 62578..63084 (-) 507 WP_070038568.1 DUF1643 domain-containing protein -
  A2I65_RS00270 (A2I65_00265) - 63098..63409 (-) 312 WP_011302036.1 DUF960 family protein -
  A2I65_RS00275 (A2I65_00270) - 63505..63843 (-) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  A2I65_RS00280 (A2I65_00275) ccrB 64317..65945 (-) 1629 WP_253720330.1 recombinase family protein Machinery gene
  A2I65_RS00285 (A2I65_00280) ccrA 65965..67314 (-) 1350 WP_065865881.1 recombinase family protein Machinery gene
  A2I65_RS00290 (A2I65_00285) - 67485..67748 (-) 264 WP_253720332.1 hypothetical protein -
  A2I65_RS00295 (A2I65_00290) - 67814..69604 (-) 1791 WP_253720333.1 DUF927 domain-containing protein -
  A2I65_RS00300 (A2I65_00295) - 69604..69849 (-) 246 WP_071331185.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62335.14 Da        Isoelectric Point: 9.7618

>NTDB_id=180422 A2I65_RS00280 WP_253720330.1 64317..65945(-) (ccrB) [Staphylococcus carnosus strain TMW 2.212]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFAVVDVYADRGISGKSMNRPALQRLLKDANEGHIDSVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGN
IPFGYSNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSASMSASTTVNTLKD
GTKKRIRYYSCSNFRNKGAKVCSANSVRADVIEKYVMDQILEIVKSDKVLKKVVERVNQENQVDVSALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKAQLK
TLYLTIIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVFLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=180422 A2I65_RS00280 WP_253720330.1 64317..65945(-) (ccrB) [Staphylococcus carnosus strain TMW 2.212]
ATGCAACAACTTAAACAAAAACGTGTCGGTATCTATGTCCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGCTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGCACTACAACGTTTGTTAAAAGATGCGAATGAAGGTCATATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAATACATCAGACTTACTGAAAATTGTCGAAGATTTACATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACGAGTAGCGGTAAGCTCATGTTACAAATTCTAGCAAGTTTCTCCG
AATTTGAAAGAAATACAATTTTAGAGAATATTTACACCGGTCAGCATCAAAGAGCCTTAGAAGGCTACTATCAAGGCAAT
ATTCCTTTCGGATATTCTAATATACCTGATAATAAAAAAGAATTAATGATTAACCAACATGAAGCTAATATTGTGAAATA
TATTTTTGAATCTTACGCCAAAGGTCATGGTTATCGTAAAATTGCCAACGCACTCAATCATAAAGGTTATGTCACTAAGA
AAGGTAATCCTTTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAACCAGTAATCGCCGAAGGCAAACACACCCCTATTAT
TAGCCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTTCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCTTCAATGTCTGCGAGCACAACAGTTAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAATTTTCGAAATAAAGGGGCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAAAAAGTTG
TCGAACGTGTCAATCAAGAGAATCAAGTCGATGTATCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAACCAAATGAATCAACTAAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCAATGGATAAAGCACAACTCAAA
ACATTATATCTTACAATCATTGACCGTATTGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTAAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATAATACCCCTCTCGACGAAGTGTTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

81.919

100

0.819

Multiple sequence alignment