Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FORC36_RS13650 Genome accession   NZ_CP015512
Coordinates   2831452..2832099 (+) Length   215 a.a.
NCBI ID   WP_045596394.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_036     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826452..2837099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS13635 (FORC36_2550) - 2826990..2828450 (-) 1461 WP_085761360.1 MSHA biogenesis protein MshI -
  FORC36_RS13640 (FORC36_2551) csrD 2828463..2830460 (-) 1998 WP_043877331.1 RNase E specificity factor CsrD -
  FORC36_RS13645 (FORC36_2552) ssb 2830613..2831152 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  FORC36_RS13650 (FORC36_2553) qstR 2831452..2832099 (+) 648 WP_045596394.1 response regulator transcription factor Regulator
  FORC36_RS13655 (FORC36_2554) galU 2832287..2833159 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FORC36_RS13660 (FORC36_2555) uvrA 2833301..2836123 (+) 2823 WP_085761361.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24691.67 Da        Isoelectric Point: 9.8565

>NTDB_id=180228 FORC36_RS13650 WP_045596394.1 2831452..2832099(+) (qstR) [Vibrio vulnificus strain FORC_036]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAMTDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=180228 FORC36_RS13650 WP_045596394.1 2831452..2832099(+) (qstR) [Vibrio vulnificus strain FORC_036]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGACAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATGACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment