Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   BWQ98_RS02400 Genome accession   NZ_CP019299
Coordinates   444936..445985 (+) Length   349 a.a.
NCBI ID   WP_127244993.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HKU1-14     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 439936..450985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWQ98_RS02375 (BWQ98_02375) - 441217..441573 (+) 357 WP_000114430.1 hypothetical protein -
  BWQ98_RS02380 (BWQ98_02380) dnaJ 441974..443099 (+) 1126 Protein_443 molecular chaperone DnaJ -
  BWQ98_RS02385 (BWQ98_02390) - 443433..443720 (-) 288 WP_000777753.1 hypothetical protein -
  BWQ98_RS02390 (BWQ98_02395) - 443730..444140 (-) 411 WP_001278322.1 HIT family protein -
  BWQ98_RS02395 (BWQ98_02400) pptA 444208..444939 (+) 732 WP_000889956.1 ABC transporter ATP-binding protein Regulator
  BWQ98_RS02400 (BWQ98_02405) pptB 444936..445985 (+) 1050 WP_127244993.1 ABC transporter permease Regulator
  BWQ98_RS02405 (BWQ98_02410) - 446153..446482 (-) 330 WP_000132572.1 hypothetical protein -
  BWQ98_RS02410 (BWQ98_02415) - 446758..447096 (+) 339 WP_050115203.1 LytTR family DNA-binding domain-containing protein -
  BWQ98_RS02415 (BWQ98_02420) comE/blpR 447101..447838 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  BWQ98_RS02420 (BWQ98_02425) - 447852..449192 (+) 1341 WP_127244994.1 sensor histidine kinase -
  BWQ98_RS02425 (BWQ98_02430) blpC 449236..449391 (-) 156 WP_061450964.1 quorum-sensing system pheromone BlpC -
  BWQ98_RS02430 (BWQ98_02435) - 449448..450809 (-) 1362 WP_050211505.1 bacteriocin secretion accessory protein -
  BWQ98_RS11765 comA/nlmT 450820..450984 (-) 165 WP_306420852.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40541.61 Da        Isoelectric Point: 9.8049

>NTDB_id=179902 BWQ98_RS02400 WP_127244993.1 444936..445985(+) (pptB) [Streptococcus pneumoniae strain HKU1-14]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQDFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=179902 BWQ98_RS02400 WP_127244993.1 444936..445985(+) (pptB) [Streptococcus pneumoniae strain HKU1-14]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCTTGCTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTCTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATTCTAAAGGTTGTTCAGAAGGTGTCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGACCTTTTTGCCCTTAGTCTCCGTCTGCTCTTGCTTTCT
TTGCTGGCGCAGGTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTTTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467