Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A6043_RS05330 | Genome accession | NZ_CP015431 |
| Coordinates | 1129295..1130488 (-) | Length | 397 a.a. |
| NCBI ID | WP_010945037.1 | Uniprot ID | Q7VM72 |
| Organism | [Haemophilus] ducreyi strain GHA3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1124295..1135488
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6043_RS05305 (A6043_05315) | lptE | 1126215..1126712 (+) | 498 | WP_010945042.1 | LPS assembly lipoprotein LptE | - |
| A6043_RS05310 (A6043_05320) | holA | 1126718..1127743 (+) | 1026 | WP_010945041.1 | DNA polymerase III subunit delta | - |
| A6043_RS05315 (A6043_05325) | yacG | 1127777..1127965 (-) | 189 | WP_010945040.1 | DNA gyrase inhibitor YacG | - |
| A6043_RS05320 (A6043_05330) | coaE | 1127968..1128585 (-) | 618 | WP_010945039.1 | dephospho-CoA kinase | - |
| A6043_RS05325 (A6043_05335) | - | 1128603..1129295 (-) | 693 | WP_041603480.1 | prepilin peptidase | - |
| A6043_RS05330 (A6043_05340) | pilC | 1129295..1130488 (-) | 1194 | WP_010945037.1 | type II secretion system F family protein | Machinery gene |
| A6043_RS05335 (A6043_05345) | pilB | 1130472..1131866 (-) | 1395 | WP_064088541.1 | GspE/PulE family protein | Machinery gene |
| A6043_RS05340 (A6043_05350) | pilA | 1131878..1132327 (-) | 450 | WP_010945035.1 | prepilin peptidase-dependent pilin | Machinery gene |
| A6043_RS05345 (A6043_05355) | radA | 1132521..1133900 (+) | 1380 | WP_010945034.1 | DNA repair protein RadA | - |
| A6043_RS05350 (A6043_05360) | - | 1133967..1134182 (-) | 216 | WP_010945033.1 | YgjV family protein | - |
| A6043_RS05355 (A6043_05365) | - | 1134304..1134789 (-) | 486 | WP_010945031.1 | dihydrofolate reductase | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 45721.33 Da Isoelectric Point: 10.1310
>NTDB_id=179581 A6043_RS05330 WP_010945037.1 1129295..1130488(-) (pilC) [[Haemophilus] ducreyi strain GHA3]
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRNFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTKMNVYLTKQEIQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKWLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMYISQLYQQKLDYQIDLFAQLLEPVLMVVIGIIVGTILIGIYLPIFDMGALV
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRNFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTKMNVYLTKQEIQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKWLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMYISQLYQQKLDYQIDLFAQLLEPVLMVVIGIIVGTILIGIYLPIFDMGALV
Nucleotide
Download Length: 1194 bp
>NTDB_id=179581 A6043_RS05330 WP_010945037.1 1129295..1130488(-) (pilC) [[Haemophilus] ducreyi strain GHA3]
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTAATTTTATTTTAGTTAGGA
AACCAAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGCTATCTGAAATTATTATGCTGTTAGAAGCGGG
GCATGCTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTCAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCACAAGTACGTAATCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGTGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTA
TATTAGTCAACTGTATCAGCAAAAACTGGATTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGGTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTAATTTTATTTTAGTTAGGA
AACCAAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGCTATCTGAAATTATTATGCTGTTAGAAGCGGG
GCATGCTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTCAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCACAAGTACGTAATCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGTGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTA
TATTAGTCAACTGTATCAGCAAAAACTGGATTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGGTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
51.637 |
100 |
0.516 |
| pilC | Haemophilus influenzae Rd KW20 |
40.75 |
100 |
0.411 |
| pilC | Haemophilus influenzae 86-028NP |
40.25 |
100 |
0.406 |