Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A6041_RS07995 Genome accession   NZ_CP015429
Coordinates   1202624..1202866 (+) Length   80 a.a.
NCBI ID   WP_231087427.1    Uniprot ID   -
Organism   [Haemophilus] ducreyi strain GHA1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1197624..1207866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6041_RS05715 (A6041_05725) rpsC 1197698..1198402 (-) 705 WP_064082475.1 30S ribosomal protein S3 -
  A6041_RS05720 (A6041_05730) rplV 1198420..1198752 (-) 333 WP_064082474.1 50S ribosomal protein L22 -
  A6041_RS05725 (A6041_05735) rpsS 1198763..1199038 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  A6041_RS05730 (A6041_05740) rplB 1199068..1199889 (-) 822 WP_064083369.1 50S ribosomal protein L2 -
  A6041_RS05735 (A6041_05745) rplW 1199910..1200215 (-) 306 WP_010945719.1 50S ribosomal protein L23 -
  A6041_RS05740 (A6041_05750) rplD 1200212..1200814 (-) 603 WP_010945720.1 50S ribosomal protein L4 -
  A6041_RS05745 (A6041_05755) rplC 1200830..1201456 (-) 627 WP_010945721.1 50S ribosomal protein L3 -
  A6041_RS05750 (A6041_05760) rpsJ 1201482..1201793 (-) 312 WP_064082472.1 30S ribosomal protein S10 -
  A6041_RS07990 sxy/tfoX 1202311..1202661 (+) 351 WP_231087428.1 TfoX/Sxy family protein Regulator
  A6041_RS07995 sxy/tfoX 1202624..1202866 (+) 243 WP_231087427.1 TfoX/Sxy family DNA transformation protein Regulator
  A6041_RS05760 (A6041_05770) fumC 1203020..1204414 (+) 1395 WP_064082471.1 class II fumarate hydratase -
  A6041_RS05765 (A6041_05775) murJ 1204528..1206096 (-) 1569 WP_064082470.1 murein biosynthesis integral membrane protein MurJ -
  A6041_RS05770 (A6041_05780) rpsT 1206457..1206720 (+) 264 WP_010945727.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9351.02 Da        Isoelectric Point: 8.4367

>NTDB_id=179545 A6041_RS07995 WP_231087427.1 1202624..1202866(+) (sxy/tfoX) [[Haemophilus] ducreyi strain GHA1]
MLELILIPSTVDEFKQVGETKAFVRLIQQGFEVNQLLLFKLYGALQHKYIYMLSLEEKKRLLEQADSALYDAGLRKRFTV

Nucleotide


Download         Length: 243 bp        

>NTDB_id=179545 A6041_RS07995 WP_231087427.1 1202624..1202866(+) (sxy/tfoX) [[Haemophilus] ducreyi strain GHA1]
TTGCTCGAGTTAATATTAATACCGTCTACCGTCGATGAATTTAAACAGGTTGGGGAAACAAAGGCGTTTGTTAGGCTTAT
CCAACAAGGATTTGAAGTCAATCAATTACTTTTATTTAAATTATATGGTGCATTACAGCATAAATATATTTATATGCTTT
CATTAGAAGAGAAAAAAAGGTTACTGGAGCAAGCAGACTCTGCACTCTATGACGCGGGGCTTAGAAAAAGATTTACGGTC
TAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(9-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

64.789

88.75

0.575
  sxy/tfoX Actinobacillus suis H91-0380

63.768

86.25

0.55
  sxy/tfoX Glaesserella parasuis strain SC1401

47.222

90

0.425

Multiple sequence alignment