Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A6040_RS07765 | Genome accession | NZ_CP015428 |
| Coordinates | 1568934..1570127 (+) | Length | 397 a.a. |
| NCBI ID | WP_010945037.1 | Uniprot ID | Q7VM72 |
| Organism | [Haemophilus] ducreyi strain VAN5 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1563934..1575127
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6040_RS07740 (A6040_07760) | - | 1564633..1565118 (+) | 486 | WP_010945031.1 | dihydrofolate reductase | - |
| A6040_RS07745 (A6040_07765) | - | 1565240..1565455 (+) | 216 | WP_010945033.1 | YgjV family protein | - |
| A6040_RS07750 (A6040_07770) | radA | 1565522..1566901 (-) | 1380 | WP_064085182.1 | DNA repair protein RadA | - |
| A6040_RS07755 (A6040_07775) | pilA | 1567095..1567544 (+) | 450 | WP_010945035.1 | prepilin peptidase-dependent pilin | Machinery gene |
| A6040_RS07760 (A6040_07780) | pilB | 1567556..1568950 (+) | 1395 | WP_010945036.1 | GspE/PulE family protein | Machinery gene |
| A6040_RS07765 (A6040_07785) | pilC | 1568934..1570127 (+) | 1194 | WP_010945037.1 | type II secretion system F family protein | Machinery gene |
| A6040_RS07770 (A6040_07790) | - | 1570127..1570819 (+) | 693 | WP_041603480.1 | prepilin peptidase | - |
| A6040_RS07775 (A6040_07795) | coaE | 1570837..1571454 (+) | 618 | WP_010945039.1 | dephospho-CoA kinase | - |
| A6040_RS07780 (A6040_07800) | yacG | 1571457..1571645 (+) | 189 | WP_010945040.1 | DNA gyrase inhibitor YacG | - |
| A6040_RS07785 (A6040_07805) | holA | 1571679..1572704 (-) | 1026 | WP_010945041.1 | DNA polymerase III subunit delta | - |
| A6040_RS07790 (A6040_07810) | lptE | 1572710..1573207 (-) | 498 | WP_010945042.1 | LPS assembly lipoprotein LptE | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 45721.33 Da Isoelectric Point: 10.1310
>NTDB_id=179522 A6040_RS07765 WP_010945037.1 1568934..1570127(+) (pilC) [[Haemophilus] ducreyi strain VAN5]
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRNFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTKMNVYLTKQEIQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKWLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMYISQLYQQKLDYQIDLFAQLLEPVLMVVIGIIVGTILIGIYLPIFDMGALV
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRNFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTKMNVYLTKQEIQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKWLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMYISQLYQQKLDYQIDLFAQLLEPVLMVVIGIIVGTILIGIYLPIFDMGALV
Nucleotide
Download Length: 1194 bp
>NTDB_id=179522 A6040_RS07765 WP_010945037.1 1568934..1570127(+) (pilC) [[Haemophilus] ducreyi strain VAN5]
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTAATTTTATTTTAGTTAGGA
AACCAAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGCTATCTGAAATTATTATGCTGTTAGAAGCGGG
GCATGCTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTCAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCACAAGTACGTAATCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGTGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTA
TATTAGTCAACTGTATCAGCAAAAACTGGATTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGGTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTAATTTTATTTTAGTTAGGA
AACCAAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGCTATCTGAAATTATTATGCTGTTAGAAGCGGG
GCATGCTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTCAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCACAAGTACGTAATCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGTGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTA
TATTAGTCAACTGTATCAGCAAAAACTGGATTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGGTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
51.637 |
100 |
0.516 |
| pilC | Haemophilus influenzae Rd KW20 |
40.75 |
100 |
0.411 |
| pilC | Haemophilus influenzae 86-028NP |
40.25 |
100 |
0.406 |