Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A6040_RS05045 Genome accession   NZ_CP015428
Coordinates   1053493..1054128 (-) Length   211 a.a.
NCBI ID   WP_010945723.1    Uniprot ID   Q7VKD0
Organism   [Haemophilus] ducreyi strain VAN5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048493..1059128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6040_RS05030 (A6040_05040) rpsT 1049652..1049915 (-) 264 WP_010945727.1 30S ribosomal protein S20 -
  A6040_RS05035 (A6040_05045) murJ 1050276..1051844 (+) 1569 WP_041603589.1 murein biosynthesis integral membrane protein MurJ -
  A6040_RS05040 (A6040_05050) fumC 1051958..1053352 (-) 1395 WP_010945724.1 class II fumarate hydratase -
  A6040_RS05045 (A6040_05055) sxy/tfoX 1053493..1054128 (-) 636 WP_010945723.1 TfoX/Sxy family DNA transformation protein Regulator
  A6040_RS05050 (A6040_05060) rpsJ 1054545..1054856 (+) 312 WP_010945722.1 30S ribosomal protein S10 -
  A6040_RS05055 (A6040_05065) rplC 1054882..1055508 (+) 627 WP_010945721.1 50S ribosomal protein L3 -
  A6040_RS05060 (A6040_05070) rplD 1055524..1056126 (+) 603 WP_010945720.1 50S ribosomal protein L4 -
  A6040_RS05065 (A6040_05075) rplW 1056123..1056428 (+) 306 WP_010945719.1 50S ribosomal protein L23 -
  A6040_RS05070 (A6040_05080) rplB 1056449..1057270 (+) 822 WP_010945718.1 50S ribosomal protein L2 -
  A6040_RS05075 (A6040_05085) rpsS 1057300..1057575 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  A6040_RS05080 (A6040_05090) rplV 1057588..1057920 (+) 333 WP_010945717.1 50S ribosomal protein L22 -
  A6040_RS05085 (A6040_05095) rpsC 1057938..1058642 (+) 705 WP_010945716.1 30S ribosomal protein S3 -
  A6040_RS05090 (A6040_05100) rplP 1058656..1059066 (+) 411 WP_010945715.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 25231.47 Da        Isoelectric Point: 10.0735

>NTDB_id=179515 A6040_RS05045 WP_010945723.1 1053493..1054128(-) (sxy/tfoX) [[Haemophilus] ducreyi strain VAN5]
MKNIEKELENLRTIFRSIGLIKFKPYFSYMGLFKDDTMFGLYKEKCLYLRKSDQYLQEIKDTIPIHFLSDHKISRQSKIF
YLVPQHIIENISSYSHWITSSISEYQRLRSKIRTENQTKIRILLNMNINIERLLARVNINTVDEFKQVGETKAFVRLIQQ
GFEVNQLLLFKLYGALQHKYIYMLSLEEKKRLLEQADSALYDAGLRKRFTV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=179515 A6040_RS05045 WP_010945723.1 1053493..1054128(-) (sxy/tfoX) [[Haemophilus] ducreyi strain VAN5]
ATGAAAAATATAGAAAAAGAATTAGAAAACTTACGAACGATTTTCCGTTCTATAGGGCTCATTAAGTTTAAACCTTATTT
TTCCTATATGGGCTTATTTAAAGATGATACTATGTTCGGGCTATATAAGGAAAAATGTTTATATTTACGTAAGTCAGATC
AATATTTGCAGGAAATAAAAGACACTATCCCCATTCATTTTTTATCTGATCATAAAATTAGCCGCCAATCAAAAATATTT
TATCTAGTTCCTCAACACATTATTGAAAACATTTCTTCCTATTCCCACTGGATTACGTCCTCAATCTCTGAATATCAACG
TTTACGCTCAAAAATCCGCACTGAAAATCAAACTAAAATCCGAATTTTACTGAATATGAATATTAATATTGAAAGGTTAC
TTGCTCGAGTTAATATTAATACCGTCGATGAATTTAAACAGGTTGGGGAAACAAAGGCGTTTGTTAGGCTTATCCAACAA
GGATTTGAAGTCAATCAATTACTTTTATTTAAATTATATGGTGCATTACAGCATAAATATATTTATATGCTTTCATTAGA
AGAGAAAAAAAGGTTACTGGAGCAAGCCGACTCTGCGCTCTATGACGCGGGGCTTAGAAAAAGATTTACGGTCTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-195)

TfoX N-terminal domain (TfoX_N)

(14-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7VKD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

59.809

99.052

0.592
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

58.852

99.052

0.583
  sxy/tfoX Glaesserella parasuis strain SC1401

41.038

100

0.412

Multiple sequence alignment