Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A6039_RS00390 Genome accession   NZ_CP015427
Coordinates   84462..85097 (-) Length   211 a.a.
NCBI ID   WP_010945723.1    Uniprot ID   Q7VKD0
Organism   [Haemophilus] ducreyi strain VAN4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 79462..90097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6039_RS00375 (A6039_00375) rpsT 80621..80884 (-) 264 WP_010945727.1 30S ribosomal protein S20 -
  A6039_RS00380 (A6039_00380) murJ 81245..82813 (+) 1569 WP_041603589.1 murein biosynthesis integral membrane protein MurJ -
  A6039_RS00385 (A6039_00385) fumC 82927..84321 (-) 1395 WP_010945724.1 class II fumarate hydratase -
  A6039_RS00390 (A6039_00390) sxy/tfoX 84462..85097 (-) 636 WP_010945723.1 TfoX/Sxy family DNA transformation protein Regulator
  A6039_RS00395 (A6039_00395) rpsJ 85514..85825 (+) 312 WP_010945722.1 30S ribosomal protein S10 -
  A6039_RS00400 (A6039_00400) rplC 85851..86477 (+) 627 WP_010945721.1 50S ribosomal protein L3 -
  A6039_RS00405 (A6039_00405) rplD 86493..87095 (+) 603 WP_010945720.1 50S ribosomal protein L4 -
  A6039_RS00410 (A6039_00410) rplW 87092..87397 (+) 306 WP_010945719.1 50S ribosomal protein L23 -
  A6039_RS00415 (A6039_00415) rplB 87418..88239 (+) 822 WP_010945718.1 50S ribosomal protein L2 -
  A6039_RS00420 (A6039_00420) rpsS 88269..88544 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  A6039_RS00425 (A6039_00425) rplV 88557..88889 (+) 333 WP_010945717.1 50S ribosomal protein L22 -
  A6039_RS00430 (A6039_00430) rpsC 88907..89611 (+) 705 WP_010945716.1 30S ribosomal protein S3 -
  A6039_RS00435 (A6039_00435) rplP 89625..90035 (+) 411 WP_010945715.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 25231.47 Da        Isoelectric Point: 10.0735

>NTDB_id=179482 A6039_RS00390 WP_010945723.1 84462..85097(-) (sxy/tfoX) [[Haemophilus] ducreyi strain VAN4]
MKNIEKELENLRTIFRSIGLIKFKPYFSYMGLFKDDTMFGLYKEKCLYLRKSDQYLQEIKDTIPIHFLSDHKISRQSKIF
YLVPQHIIENISSYSHWITSSISEYQRLRSKIRTENQTKIRILLNMNINIERLLARVNINTVDEFKQVGETKAFVRLIQQ
GFEVNQLLLFKLYGALQHKYIYMLSLEEKKRLLEQADSALYDAGLRKRFTV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=179482 A6039_RS00390 WP_010945723.1 84462..85097(-) (sxy/tfoX) [[Haemophilus] ducreyi strain VAN4]
ATGAAAAATATAGAAAAAGAATTAGAAAACTTACGAACGATTTTCCGTTCTATAGGGCTCATTAAGTTTAAACCTTATTT
TTCCTATATGGGCTTATTTAAAGATGATACTATGTTCGGGCTATATAAGGAAAAATGTTTATATTTACGTAAGTCAGATC
AATATTTGCAGGAAATAAAAGACACTATCCCCATTCATTTTTTATCTGATCATAAAATTAGCCGCCAATCAAAAATATTT
TATCTAGTTCCTCAACACATTATTGAAAACATTTCTTCCTATTCCCACTGGATTACGTCCTCAATCTCTGAATATCAACG
TTTACGCTCAAAAATCCGCACTGAAAATCAAACTAAAATCCGAATTTTACTGAATATGAATATTAATATTGAAAGGTTAC
TTGCTCGAGTTAATATTAATACCGTCGATGAATTTAAACAGGTTGGGGAAACAAAGGCGTTTGTTAGGCTTATCCAACAA
GGATTTGAAGTCAATCAATTACTTTTATTTAAATTATATGGTGCATTACAGCATAAATATATTTATATGCTTTCATTAGA
AGAGAAAAAAAGGTTACTGGAGCAAGCCGACTCTGCGCTCTATGACGCGGGGCTTAGAAAAAGATTTACGGTCTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-195)

TfoX N-terminal domain (TfoX_N)

(14-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7VKD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

59.809

99.052

0.592
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

58.852

99.052

0.583
  sxy/tfoX Glaesserella parasuis strain SC1401

41.038

100

0.412

Multiple sequence alignment