Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   A6036_RS03600 Genome accession   NZ_CP015424
Coordinates   790836..791285 (-) Length   149 a.a.
NCBI ID   WP_010945035.1    Uniprot ID   -
Organism   [Haemophilus] ducreyi strain VAN1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 785836..796285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6036_RS03575 (A6036_03590) yacG 786735..786923 (-) 189 WP_010945040.1 DNA gyrase inhibitor YacG -
  A6036_RS03580 (A6036_03595) coaE 786926..787543 (-) 618 WP_010945039.1 dephospho-CoA kinase -
  A6036_RS03585 (A6036_03600) - 787561..788253 (-) 693 WP_041603480.1 prepilin peptidase -
  A6036_RS03590 (A6036_03605) pilC 788253..789446 (-) 1194 WP_010945037.1 type II secretion system F family protein Machinery gene
  A6036_RS03595 (A6036_03610) pilB 789430..790824 (-) 1395 WP_010945036.1 GspE/PulE family protein Machinery gene
  A6036_RS03600 (A6036_03615) pilA 790836..791285 (-) 450 WP_010945035.1 prepilin peptidase-dependent pilin Machinery gene
  A6036_RS03605 (A6036_03620) radA 791479..792858 (+) 1380 WP_064085182.1 DNA repair protein RadA -
  A6036_RS03610 (A6036_03625) - 792925..793140 (-) 216 WP_010945033.1 YgjV family protein -
  A6036_RS03615 (A6036_03630) - 793262..793747 (-) 486 WP_010945031.1 dihydrofolate reductase -
  A6036_RS03620 (A6036_03635) - 793867..794616 (+) 750 WP_041603673.1 TSUP family transporter -
  A6036_RS03625 (A6036_03640) nth 794646..795281 (+) 636 WP_010945029.1 endonuclease III -
  A6036_RS03630 (A6036_03645) fdhD 795359..796045 (-) 687 Protein_711 formate dehydrogenase accessory sulfurtransferase FdhD -
  A6036_RS08210 - 796046..796156 (+) 111 Protein_712 formate dehydrogenase N subunit beta transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16256.69 Da        Isoelectric Point: 6.9012

>NTDB_id=179419 A6036_RS03600 WP_010945035.1 790836..791285(-) (pilA) [[Haemophilus] ducreyi strain VAN1]
MSSLFLIKPLQKAFTLIELMIVIAIIAILATVAIPSYNSYTKKAALSELLAASSAYKTDVEICVYNLGRTDGCNNGENGI
KNDKLDKSKYVASVAVENGEITVKGKESLKDYSYTMKPELQQDGHLTWKTTCNGADTSLFPANFCSTKE

Nucleotide


Download         Length: 450 bp        

>NTDB_id=179419 A6036_RS03600 WP_010945035.1 790836..791285(-) (pilA) [[Haemophilus] ducreyi strain VAN1]
ATGTCATCTTTATTTTTGATTAAGCCACTACAAAAAGCGTTTACTTTAATTGAATTAATGATTGTGATTGCCATTATCGC
AATTTTAGCCACGGTTGCGATTCCTTCTTACAATAGTTATACCAAAAAAGCTGCGTTATCTGAGTTATTAGCCGCTTCAT
CAGCGTATAAAACCGATGTAGAAATATGTGTTTATAATCTTGGTAGAACGGATGGATGCAATAATGGAGAAAATGGTATA
AAAAATGATAAATTAGATAAAAGTAAATATGTTGCTTCAGTTGCGGTGGAAAATGGAGAAATTACAGTAAAAGGTAAAGA
AAGCCTTAAAGATTATAGTTACACAATGAAGCCAGAACTACAACAAGATGGGCACTTAACTTGGAAAACGACTTGTAATG
GTGCTGATACTAGCCTTTTCCCTGCTAATTTTTGTTCTACTAAAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-33)

Pilin (bacterial filament) (Pilin)

(43-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

59.868

100

0.611
  pilA Haemophilus influenzae Rd KW20

56.25

96.644

0.544
  pilA Haemophilus influenzae 86-028NP

57.143

93.96

0.537

Multiple sequence alignment