Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BWI85_RS14690 Genome accession   NZ_CP019256
Coordinates   2823716..2824453 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 13TMH22     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2818716..2829453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI85_RS14655 (BWI85_14895) yfiL 2818874..2819239 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  BWI85_RS14660 (BWI85_14900) aroF 2819449..2820519 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BWI85_RS14665 (BWI85_14905) tyrA 2820530..2821651 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BWI85_RS14670 (BWI85_14910) pheA 2821694..2822854 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  BWI85_RS14675 pheL 2822953..2823000 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BWI85_RS14680 (BWI85_14915) raiA 2823104..2823445 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BWI85_RS14690 (BWI85_14925) comL 2823716..2824453 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BWI85_RS14695 (BWI85_14930) rluD 2824588..2825568 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BWI85_RS14700 (BWI85_14935) yfiH 2825565..2826296 (+) 732 WP_000040114.1 purine nucleoside phosphorylase YfiH -
  BWI85_RS14705 (BWI85_14940) clpC 2826426..2828999 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=179288 BWI85_RS14690 WP_000197686.1 2823716..2824453(-) (comL) [Escherichia coli strain 13TMH22]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=179288 BWI85_RS14690 WP_000197686.1 2823716..2824453(-) (comL) [Escherichia coli strain 13TMH22]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376