Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABE65_RS21230 Genome accession   NZ_CP015378
Coordinates   4199249..4199794 (-) Length   181 a.a.
NCBI ID   WP_066399530.1    Uniprot ID   -
Organism   Fictibacillus phosphorivorans strain G25-29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4194249..4204794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE65_RS21210 (ABE65_021210) rplI 4195130..4195573 (-) 444 WP_066399517.1 50S ribosomal protein L9 -
  ABE65_RS21215 (ABE65_021215) - 4195570..4197543 (-) 1974 WP_066399519.1 DHH family phosphoesterase -
  ABE65_RS21220 (ABE65_021220) - 4197555..4198499 (-) 945 WP_066399521.1 YybS family protein -
  ABE65_RS21225 (ABE65_021225) rpsR 4198958..4199191 (-) 234 WP_066399523.1 30S ribosomal protein S18 -
  ABE65_RS21230 (ABE65_021230) ssbA 4199249..4199794 (-) 546 WP_066399530.1 single-stranded DNA-binding protein Machinery gene
  ABE65_RS21235 (ABE65_021235) rpsF 4199816..4200106 (-) 291 WP_066399533.1 30S ribosomal protein S6 -
  ABE65_RS21240 (ABE65_021240) ychF 4200488..4201585 (-) 1098 WP_066399536.1 redox-regulated ATPase YchF -
  ABE65_RS21245 (ABE65_021245) - 4201781..4201978 (-) 198 WP_066399539.1 DUF951 domain-containing protein -
  ABE65_RS21250 (ABE65_021250) - 4201992..4202876 (-) 885 WP_231607313.1 mechanosensitive ion channel family protein -
  ABE65_RS21255 (ABE65_021255) yyaC 4203100..4203732 (+) 633 WP_153236843.1 spore protease YyaC -
  ABE65_RS21260 (ABE65_021260) - 4203776..4204510 (-) 735 WP_066399542.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20050.87 Da        Isoelectric Point: 4.9528

>NTDB_id=179042 ABE65_RS21230 WP_066399530.1 4199249..4199794(-) (ssbA) [Fictibacillus phosphorivorans strain G25-29]
MLNRVVLVGRLTKDPELKYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVMAESVQFLEPKNANAGGQQYQGNSNNFGGPSNDRGFGQQNQNRSYGSDNGFGGQQQQQNPKRNNF
NDDPFANDGTPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=179042 ABE65_RS21230 WP_066399530.1 4199249..4199794(-) (ssbA) [Fictibacillus phosphorivorans strain G25-29]
ATGCTAAATCGAGTAGTACTGGTGGGACGTTTAACAAAAGACCCAGAATTAAAGTACACTCCAAACGGTGTGGCAGTTGC
TAATTTCACACTTGCTGTTAATCGACCTTTTTCGAATCAGCAAGGTGAGCGCGAAGCAGATTTCATTAACTGTGTCGTAT
GGCGTAAGCCCGCTGAAAATGTAGCGAACTTCTTGAAAAAGGGATCGCTTGCAGGAGTGGATGGACGTTTGCAAACTCGT
TCTTACGAGAACCAGCAGGGTCAAAGAGTGTATGTTACTGAAGTAATGGCAGAAAGTGTTCAATTCCTTGAACCTAAAAA
CGCTAATGCTGGAGGCCAGCAATATCAAGGCAACAGCAACAACTTTGGTGGACCATCAAATGACCGCGGATTTGGGCAGC
AAAATCAGAACCGCAGCTATGGAAGTGACAACGGCTTTGGAGGACAGCAACAACAGCAGAATCCAAAACGTAATAACTTC
AACGATGACCCGTTTGCAAATGATGGCACGCCGATCGACATCTCTGATGACGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.109

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

59.016

100

0.597
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment