Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AS891_RS10805 Genome accession   NZ_CP015375
Coordinates   2059151..2059486 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2054151..2064486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS10755 (AS891_10750) comGC 2054170..2054466 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AS891_RS10760 (AS891_10755) comGD 2054456..2054887 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  AS891_RS10765 (AS891_10760) comGE 2054871..2055218 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  AS891_RS10770 (AS891_10765) comGF 2055244..2055627 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  AS891_RS10775 (AS891_10770) comGG 2055628..2056002 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  AS891_RS10780 (AS891_10775) spoIITA 2056073..2056252 (+) 180 WP_003230176.1 YqzE family protein -
  AS891_RS10785 (AS891_10780) yqzG 2056294..2056620 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  AS891_RS10790 (AS891_10785) tapA 2056892..2057653 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  AS891_RS10795 (AS891_10790) sipW 2057637..2058209 (+) 573 WP_003246088.1 signal peptidase I SipW -
  AS891_RS10800 (AS891_10795) tasA 2058273..2059058 (+) 786 WP_004398632.1 biofilm matrix protein TasA -
  AS891_RS10805 (AS891_10800) sinR 2059151..2059486 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  AS891_RS10810 (AS891_10805) sinI 2059596..2059769 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  AS891_RS10815 (AS891_10810) yqhG 2059952..2060746 (-) 795 WP_003230200.1 YqhG family protein -
  AS891_RS10820 (AS891_10815) hepAA 2060767..2062440 (-) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  AS891_RS10825 (AS891_10820) gcvT 2062882..2063970 (+) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=178920 AS891_RS10805 WP_003226345.1 2059151..2059486(-) (sinR) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=178920 AS891_RS10805 WP_003226345.1 2059151..2059486(-) (sinR) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment