Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MCBMB27_RS12585 Genome accession   NZ_CP015367
Coordinates   2792974..2793447 (-) Length   157 a.a.
NCBI ID   WP_075380550.1    Uniprot ID   A0AAE8HSJ8
Organism   Methylobacterium phyllosphaerae strain CBMB27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2787974..2798447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCBMB27_RS12525 (MCBMB27_02597) - 2788215..2789447 (-) 1233 WP_075380540.1 integrase -
  MCBMB27_RS12530 (MCBMB27_02598) - 2789437..2789703 (-) 267 WP_075380541.1 hypothetical protein -
  MCBMB27_RS12535 (MCBMB27_02599) - 2789707..2790099 (-) 393 WP_236952959.1 DUF2116 family Zn-ribbon domain-containing protein -
  MCBMB27_RS12540 (MCBMB27_02600) - 2790096..2790323 (-) 228 WP_075380542.1 hypothetical protein -
  MCBMB27_RS12545 (MCBMB27_02601) - 2790316..2790885 (-) 570 WP_083683492.1 hypothetical protein -
  MCBMB27_RS12550 (MCBMB27_02602) - 2790878..2791144 (-) 267 WP_075380543.1 hypothetical protein -
  MCBMB27_RS12555 (MCBMB27_02603) - 2791141..2791419 (-) 279 WP_075380544.1 hypothetical protein -
  MCBMB27_RS12560 (MCBMB27_02604) - 2791412..2791627 (-) 216 WP_075380545.1 hypothetical protein -
  MCBMB27_RS12565 (MCBMB27_02605) - 2791624..2791845 (-) 222 WP_075380546.1 hypothetical protein -
  MCBMB27_RS12570 (MCBMB27_02606) - 2791842..2792282 (-) 441 WP_236952960.1 DUF4031 domain-containing protein -
  MCBMB27_RS12575 (MCBMB27_02607) - 2792225..2792563 (-) 339 WP_075380548.1 hypothetical protein -
  MCBMB27_RS12580 (MCBMB27_02608) - 2792560..2792895 (-) 336 WP_075380549.1 hypothetical protein -
  MCBMB27_RS12585 (MCBMB27_02609) ssb 2792974..2793447 (-) 474 WP_075380550.1 single-stranded DNA-binding protein Machinery gene
  MCBMB27_RS12590 (MCBMB27_02610) - 2793463..2793771 (-) 309 WP_075380551.1 hypothetical protein -
  MCBMB27_RS12595 (MCBMB27_02611) - 2793840..2794796 (-) 957 WP_075380552.1 DUF2303 family protein -
  MCBMB27_RS12600 (MCBMB27_02612) - 2794836..2795177 (-) 342 WP_075380553.1 hypothetical protein -
  MCBMB27_RS12605 (MCBMB27_02613) - 2795200..2795835 (-) 636 WP_075380554.1 hypothetical protein -
  MCBMB27_RS12610 (MCBMB27_02614) - 2795835..2796326 (-) 492 WP_075380555.1 hypothetical protein -
  MCBMB27_RS12615 (MCBMB27_02616) - 2796454..2796849 (-) 396 WP_075380556.1 hypothetical protein -
  MCBMB27_RS12620 (MCBMB27_02617) - 2797088..2797372 (-) 285 WP_075380557.1 hypothetical protein -
  MCBMB27_RS12625 (MCBMB27_02618) - 2797436..2798401 (-) 966 WP_159020330.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17370.45 Da        Isoelectric Point: 10.1793

>NTDB_id=178853 MCBMB27_RS12585 WP_075380550.1 2792974..2793447(-) (ssb) [Methylobacterium phyllosphaerae strain CBMB27]
MLNKVTLIGRLGRDPEVRHTTAGDRVVSFGLATSERWKDKTIGERKERTEWHNIVIFNDGLGKIAEQYLKKGSKVYLEGQ
IQSRKYQGNDGVERTAFEIVLRRFAGEMTLLDDSERRPAPDPDSYGTTRSRESAPGSVQSGGASRPAIPAGSPNRPG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=178853 MCBMB27_RS12585 WP_075380550.1 2792974..2793447(-) (ssb) [Methylobacterium phyllosphaerae strain CBMB27]
ATGCTCAACAAGGTCACGCTCATCGGCCGGCTCGGCCGCGATCCCGAAGTCCGCCACACGACAGCCGGCGATCGCGTCGT
CAGCTTCGGCCTCGCCACCTCCGAGCGCTGGAAGGACAAGACCATCGGCGAGCGCAAGGAGCGCACCGAGTGGCACAACA
TCGTCATCTTCAACGACGGGCTCGGCAAGATCGCCGAGCAGTATTTGAAGAAGGGCTCGAAGGTCTACCTCGAAGGTCAG
ATCCAGAGCCGCAAGTACCAGGGCAACGACGGCGTCGAGCGCACCGCCTTTGAGATCGTACTGCGCCGATTTGCCGGCGA
GATGACGCTGCTGGACGACAGCGAGCGCCGGCCCGCGCCCGATCCCGACAGCTACGGCACGACCCGCTCGCGCGAGAGCG
CGCCCGGCTCCGTCCAGTCCGGCGGCGCATCTCGCCCCGCGATCCCGGCCGGCAGCCCGAACCGCCCCGGCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

49.405

100

0.529
  ssb Neisseria meningitidis MC58

50.633

100

0.51

Multiple sequence alignment