Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   FORC54_RS11635 Genome accession   NZ_CP019121
Coordinates   2252283..2254436 (-) Length   717 a.a.
NCBI ID   WP_233902435.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2247283..2259436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS11610 (FORC54_2071) - 2247618..2248406 (-) 789 WP_017422018.1 sensor domain-containing diguanylate cyclase -
  FORC54_RS11615 (FORC54_2072) kdsB 2248577..2249332 (-) 756 WP_017790162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FORC54_RS11620 (FORC54_2073) - 2249332..2249511 (-) 180 WP_011079973.1 Trm112 family protein -
  FORC54_RS11625 (FORC54_2074) lpxK 2249492..2250499 (-) 1008 WP_101958849.1 tetraacyldisaccharide 4'-kinase -
  FORC54_RS11630 (FORC54_2075) msbA 2250499..2252250 (-) 1752 WP_080526669.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FORC54_RS11635 (FORC54_2076) comEC 2252283..2254436 (-) 2154 WP_233902435.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FORC54_RS11640 (FORC54_2077) - 2254541..2255050 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  FORC54_RS11645 (FORC54_2078) lolE 2255246..2256490 (-) 1245 WP_101958851.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  FORC54_RS11650 (FORC54_2079) lolD 2256501..2257184 (-) 684 WP_017422025.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FORC54_RS11655 (FORC54_2080) lolC 2257177..2258382 (-) 1206 WP_101958852.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  FORC54_RS11660 (FORC54_2081) - 2258648..2259217 (+) 570 WP_039545859.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80506.95 Da        Isoelectric Point: 8.5473

>NTDB_id=178792 FORC54_RS11635 WP_233902435.1 2252283..2254436(-) (comEC) [Vibrio vulnificus strain FORC_054]
MLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSITAINNSH
LVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRLVSVKGGRQALIEKA
QQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSL
SWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCLAMSPFSALSASLWLSFLAVSCVFLVVDLHESS
STWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFSLVVVPVIFVALVLTALDMMPVASMLWQLADFS
LWPLTFAMPYAHLGWWGLSSFQVLLVALCALAVMLRHVIRWQFSAVLIILLSTSSLLNQPLSRTRIDVLDVGHGLAVLIE
KDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQKMRPQWVRSSHYLSDFPCIKGQD
FEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDALAEWILIREPEQLNSDVVLVPHHGSRTSSIEPF
VNAVQADAAIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITLYVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=178792 FORC54_RS11635 WP_233902435.1 2252283..2254436(-) (comEC) [Vibrio vulnificus strain FORC_054]
ATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGGTGACCATCGCACTTTT
GATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAGAATATTACCATAAATG
GCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGCAATAAATAATAGTCAT
TTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATCAAATCGTAGCGCATGT
GACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTCAGCCAAGGCATCGTTG
GACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGCGCTGATCGAAAAAGCT
CAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCGACGACATTACCGACGA
GCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATTGGTATGGCTTTTGGTA
TCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGCTATTGGACTGAGTCTC
AGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCACGTTAGTCGCCTTGTT
CTCGTTTACGTCGGGGCAAGTCGGTCGCTGGACAGTCTTGCTATTGGCACTGGCCTTTTGCCTAGCGATGTCGCCATTTT
CTGCTCTTTCTGCCAGTCTCTGGCTCTCTTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGATCTCCATGAATCGTCT
TCCACTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTACTGCTTTATCTCGCACCTGTGACTGCTTA
CTTCTTTTCCGGTCTGAGTTTAGCCGCCTGGCTGTACAACTTTCTGTTTATCCCTTGGTTTAGCTTGGTGGTGGTGCCTG
TCATATTTGTTGCACTCGTGCTGACGGCACTGGATATGATGCCTGTGGCCAGTATGCTATGGCAGTTGGCGGATTTTAGT
TTATGGCCATTAACTTTCGCGATGCCTTACGCCCATTTAGGCTGGTGGGGGCTGTCTTCTTTTCAGGTGTTGTTGGTCGC
GTTGTGTGCGCTCGCTGTGATGCTTCGACATGTTATTCGCTGGCAATTCTCTGCCGTTCTGATCATTTTGCTCAGCACTT
CTTCACTCTTGAACCAGCCTCTTTCTCGCACCCGAATTGACGTTTTGGATGTTGGCCATGGGCTCGCCGTATTGATTGAG
AAAGACGGTAAAACACTGCTTTATGACACCGGAAAGTCTTGGCATGGTGGCAGTATTGCGCAGCAAGTGATAGAGCCTAT
TTTATTGAGTCGGGGTAGTAGAAGCCTGGATGGGGTGATCATCAGTCATCAAGATGACGATCATGCAGGTGGCTTGCCCT
ATTTGCAGCAAAAAATGCGCCCACAGTGGGTAAGGAGTAGTCATTACTTGAGTGACTTTCCTTGTATTAAAGGTCAGGAC
TTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCACCAAGGCAAGTGACTCGTGCCTACAATCCACACTCCTGTGT
GATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTGGCTGAGTGGATCCTGA
TTCGTGAACCTGAACAGTTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCGAACTTCGTCGATTGAGCCTTTT
GTGAACGCGGTCCAAGCAGACGCGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGCCACAACCGCAAGTGGT
CGAGACTTATCGACGACATCGTACGCAGTGGTTTGATACCGGCGAGCTGGGCCAGATAACGTTGTATGTGGAACAGAGAA
ACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(176-436)

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

45.166

100

0.456
  comEC Vibrio parahaemolyticus RIMD 2210633

46.383

98.326

0.456
  comEC Vibrio cholerae strain A1552

42.659

100

0.43