Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FORC54_RS00680 Genome accession   NZ_CP019121
Coordinates   147082..149163 (-) Length   693 a.a.
NCBI ID   WP_101958230.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 142082..154163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS00665 (FORC54_0119) ompR 143235..143954 (+) 720 WP_011078925.1 two-component system response regulator OmpR -
  FORC54_RS00670 (FORC54_0120) envZ 144047..145345 (+) 1299 WP_039561898.1 two-component system sensor histidine kinase EnvZ -
  FORC54_RS00675 (FORC54_0121) - 145421..146794 (-) 1374 WP_101958229.1 uracil-xanthine permease family protein -
  FORC54_RS00680 (FORC54_0122) recG 147082..149163 (-) 2082 WP_101958230.1 ATP-dependent DNA helicase RecG Machinery gene
  FORC54_RS00685 (FORC54_0123) trmH 149275..149961 (-) 687 WP_038941674.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  FORC54_RS00690 (FORC54_0124) spoT 150049..152169 (-) 2121 WP_038964522.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FORC54_RS00695 (FORC54_0125) rpoZ 152204..152476 (-) 273 WP_017420484.1 DNA-directed RNA polymerase subunit omega -
  FORC54_RS00700 (FORC54_0126) gmk 152604..153227 (-) 624 WP_011078918.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76897.03 Da        Isoelectric Point: 7.5816

>NTDB_id=178753 FORC54_RS00680 WP_101958230.1 147082..149163(-) (recG) [Vibrio vulnificus strain FORC_054]
MSAQLLSAVPLTSLSGVGAKVTEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEMNLELFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKTKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRVARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=178753 FORC54_RS00680 WP_101958230.1 147082..149163(-) (recG) [Vibrio vulnificus strain FORC_054]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACGTCCCTCAGCGGGGTCGGTGCTAAGGTGACTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGATCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGTACCCGCATCTACCCGATTG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGCAATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTAACGGTAAAACTCAGCGACGGGAATGGCACCATCACGCTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGCAATATGGGACTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATGAATCTGGAACTGTTCG
ATGAAGGAAAGCACCCAGCCCAAATCCGCTTAATTATGGAAGAGTTGTTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGTTGCCACTGCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCCCAGCTGCCTTT
TTCACCGACCAATGCCCAAGCGCGGGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCGGGCAAAACCTTAGTGGCGGCATTGGCGGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTGCTGGCCGAGCAGCACGCGATCAACTTCGCTAATTGGTTTGAAAAAATGGGCATCCC
CGTTGGCTGGCTAGCAGGCAAGCTCAAAGGCAAGACCAAAGAAGCGGAGTTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTTGGGACGCATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCGCTTGTGATCATTGATGAACAACAT
CGCTTTGGCGTACATCAACGCTTGGAGCTGCGTGAAAAAGGCGCCAAACAAGGTGCTTACCCACACCAACTGATCATGAC
CGCCACTCCGATCCCTCGCACATTGGCCATGACCGCCTATGCCGATTTGGAAACGTCGGTGATCGACGAGTTACCGCCGG
GGCGCACCCCGATCCAAACCGTCGCGATTCCCGATACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGCAAGCAGGCGTATTGGGTCTGTACCTTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGAAAC
CGCCGAAGAGCTGCAACGTAAATTGCCTGATGTGCGCATTGGTTTGGTGCATGGCCGAATGAAACCGGCTGAAAAACAAG
CGGTAATGCAAGCGTTCAAAAACAATGAATTACATCTTTTAGTCGCCACAACAGTGATCGAAGTCGGTGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCTGAGCGCTTGGGTCTCGCACAATTGCATCAGTTGCGCGGTCGCGTCGGTCG
AGGCTCAGTTGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACAGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCCCAGCGCGATCTTGAAATCCGCGGGCCGGGCGAACTACTTGGCACCAAACAG
ACTGGCTTGGCGGATTTCAAAATTGCCGATTTGGTCCGCGATCAGCGCCTGATCCCCGAAGTTCAGCGCGTCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGCTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(271-433)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.031

96.825

0.475
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.939

95.238

0.371