Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SporoP32a_RS09540 Genome accession   NZ_CP015348
Coordinates   1908215..1908736 (-) Length   173 a.a.
NCBI ID   WP_085427687.1    Uniprot ID   A0A2G5XEJ7
Organism   Sporosarcina ureae strain P32a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1903215..1913736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP32a_RS09520 (SporoP32a_09445) rplI 1904312..1904758 (-) 447 WP_085132246.1 50S ribosomal protein L9 -
  SporoP32a_RS09525 (SporoP32a_09450) - 1904758..1906731 (-) 1974 WP_085427685.1 DHH family phosphoesterase -
  SporoP32a_RS09530 (SporoP32a_09455) - 1906743..1907681 (-) 939 WP_085427686.1 DUF2232 domain-containing protein -
  SporoP32a_RS09535 (SporoP32a_09460) rpsR 1907932..1908168 (-) 237 WP_029054370.1 30S ribosomal protein S18 -
  SporoP32a_RS09540 (SporoP32a_09465) ssbA 1908215..1908736 (-) 522 WP_085427687.1 single-stranded DNA-binding protein Machinery gene
  SporoP32a_RS09545 (SporoP32a_09470) rpsF 1908784..1909071 (-) 288 WP_085132250.1 30S ribosomal protein S6 -
  SporoP32a_RS17440 - 1909227..1909496 (+) 270 WP_335696102.1 hypothetical protein -
  SporoP32a_RS17445 - 1909460..1909768 (+) 309 WP_335696103.1 DUF3267 domain-containing protein -
  SporoP32a_RS09555 (SporoP32a_09480) ychF 1909959..1911059 (-) 1101 WP_085427688.1 redox-regulated ATPase YchF -
  SporoP32a_RS09560 (SporoP32a_09485) - 1911154..1911351 (-) 198 WP_083034454.1 DUF951 domain-containing protein -
  SporoP32a_RS09565 (SporoP32a_09490) - 1911332..1912267 (-) 936 WP_085427689.1 mechanosensitive ion channel family protein -
  SporoP32a_RS09570 (SporoP32a_09495) yyaC 1912380..1913021 (+) 642 WP_085427690.1 spore protease YyaC -
  SporoP32a_RS09575 (SporoP32a_09500) - 1912932..1913636 (-) 705 WP_085427691.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19042.88 Da        Isoelectric Point: 4.7621

>NTDB_id=178692 SporoP32a_RS09540 WP_085427687.1 1908215..1908736(-) (ssbA) [Sporosarcina ureae strain P32a]
MINRVVLVGRLTKDPELKYTQTGIAVTRFTLAVNRAFANAQGEREADFITCVAWRKQAENIANYLRKGSLAGVDGRIQTG
SFEGQDGKRVYTTEVVADSTQFLEPKSSNTERQQTPSYGGGAPSYNAPSQDQGQGYNNQQSYQPNQQNMTRVDNDPFQPG
GGPIEVTDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=178692 SporoP32a_RS09540 WP_085427687.1 1908215..1908736(-) (ssbA) [Sporosarcina ureae strain P32a]
ATGATAAACCGTGTCGTTTTAGTTGGTCGATTAACAAAAGATCCTGAGCTGAAGTATACACAGACTGGAATCGCTGTAAC
TCGTTTCACACTTGCAGTGAACCGTGCGTTCGCTAACGCGCAAGGAGAGCGAGAAGCCGATTTCATCACATGTGTTGCTT
GGCGTAAACAGGCTGAAAATATCGCGAATTACTTACGAAAAGGAAGTCTAGCTGGAGTGGATGGCCGTATACAGACGGGC
AGCTTCGAAGGTCAAGACGGTAAGCGCGTTTACACGACAGAAGTTGTTGCGGACAGTACTCAATTCCTGGAGCCGAAGAG
TTCTAATACAGAACGGCAGCAGACACCATCTTATGGTGGTGGAGCACCTTCGTATAATGCACCTTCTCAAGACCAGGGAC
AAGGATACAATAACCAGCAATCCTACCAACCGAATCAGCAAAATATGACACGTGTCGATAATGATCCATTCCAACCAGGC
GGCGGTCCGATTGAAGTAACAGATGACGACTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G5XEJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.618

100

0.572
  ssb Latilactobacillus sakei subsp. sakei 23K

51.412

100

0.526
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376

Multiple sequence alignment