Detailed information NTG0178633

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A6K25_RS09440
• Genome accession: NZ_CP015345
• Coordinates: 2280182..2281102 (-)
• Length: 306 a.a.
• NCBI ID: WP_057789974.1
• Uniprot ID: A0AAW7Z115
• Organism: Alteromonas stellipolaris strain PQQ-42
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2275182..2286102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6K25_RS09415 (A6K25_09430)	mutT	2276958..2277353 (+)	396	WP_057789965.1	8-oxo-dGTP diphosphatase MutT	-
A6K25_RS09420 (A6K25_09435)	-	2277461..2278339 (-)	879	WP_057789967.1	aspartoacylase	-
A6K25_RS09425 (A6K25_09440)	yacG	2278350..2278577 (-)	228	WP_057789970.1	DNA gyrase inhibitor YacG	-
A6K25_RS09430 (A6K25_09445)	zapD	2278619..2279371 (-)	753	WP_057789972.1	cell division protein ZapD	-
A6K25_RS09435 (A6K25_09450)	coaE	2279538..2280122 (-)	585	WP_057795957.1	dephospho-CoA kinase	-
A6K25_RS09440 (A6K25_09455)	pilD	2280182..2281102 (-)	921	WP_057789974.1	prepilin peptidase	Machinery gene
A6K25_RS09445 (A6K25_09460)	pilC	2281213..2282421 (-)	1209	WP_057789976.1	type II secretion system F family protein	Machinery gene
A6K25_RS09450 (A6K25_09465)	-	2282487..2282936 (-)	450	WP_057789978.1	pilin	-
A6K25_RS09455 (A6K25_09470)	nadC	2283302..2284156 (-)	855	WP_057789980.1	carboxylating nicotinate-nucleotide diphosphorylase	-
A6K25_RS09460 (A6K25_09475)	-	2284175..2284705 (-)	531	WP_138118214.1	retropepsin-like aspartic protease family protein	-
A6K25_RS09465 (A6K25_09480)	ampD	2285162..2285734 (+)	573	WP_063456813.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 34070.26 Da
• Isoelectric Point: 7.6237

>NTDB_id=178633 A6K25_RS09440 WP_057789974.1 2280182..2281102(-) (pilD) [Alteromonas stellipolaris strain PQQ-42]
MEAILLTSQLYPWLFYLFVFVVSLMVGSFLNVVIHRLPIMMENSWKQEYASYFSETDSDATNSKKNAVLDSSAQTSPETF
NLAKPDSTCPSCGHKIRAWENIPIISYLFLRGKCSNCKTPISIRYPLVELFTALTCTFAAYYFGPTPQAIWAVIFTYILI
ALIFIDLDKMLLPDQLTLPLLWLGLILSTQSIFVGPVDAIIGAAAGYLSLWSVFWLFKIVTGKEGMGYGDFKILAALGAF
TGWQGLPIIILLSSIVGAFAGIAIMLFQNKGKSLAIPFGPYLAVAGWITLFYKDTIITHYIKWALQ

Nucleotide

• Length: 921 bp

>NTDB_id=178633 A6K25_RS09440 WP_057789974.1 2280182..2281102(-) (pilD) [Alteromonas stellipolaris strain PQQ-42]
ATGGAAGCGATATTGCTTACCAGCCAATTATACCCGTGGTTATTCTACCTATTTGTTTTTGTAGTGAGTTTAATGGTAGG
AAGCTTTTTAAATGTGGTTATTCATCGCTTGCCCATTATGATGGAAAACAGTTGGAAGCAGGAATACGCCAGTTACTTTA
GTGAAACTGATAGCGATGCAACAAATAGCAAGAAAAACGCTGTTTTAGATTCTAGTGCACAAACTTCCCCTGAAACGTTT
AATTTAGCCAAGCCAGATAGCACCTGTCCTAGTTGCGGCCACAAAATTCGGGCATGGGAAAACATTCCTATTATTAGCTA
TTTATTCCTTCGCGGGAAATGTTCAAATTGTAAAACCCCTATTTCTATTCGCTATCCGTTAGTTGAGTTATTCACTGCCC
TAACCTGTACATTCGCCGCCTATTATTTTGGCCCAACACCGCAAGCAATATGGGCGGTGATATTTACTTATATTCTTATT
GCCTTAATTTTTATCGATTTAGATAAAATGTTGCTTCCTGATCAACTTACCCTACCCTTACTTTGGCTTGGTTTAATACT
TAGCACACAATCCATTTTTGTAGGCCCTGTTGACGCTATCATTGGTGCCGCCGCCGGATATTTGAGTTTATGGTCTGTAT
TCTGGTTGTTTAAAATAGTCACCGGGAAGGAAGGCATGGGATATGGCGACTTCAAAATATTGGCCGCCCTTGGTGCTTTC
ACAGGCTGGCAGGGCTTGCCTATCATCATTTTACTGTCTTCAATTGTAGGGGCTTTTGCTGGTATTGCCATTATGCTATT
CCAAAATAAAGGCAAATCATTGGCTATCCCCTTCGGGCCATATCTTGCCGTCGCAGGTTGGATAACACTCTTTTATAAAG
ACACGATTATTACCCACTATATAAAATGGGCGCTACAGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.22	96.405	0.513
pilD	Vibrio cholerae strain A1552	52.218	95.752	0.5
pilD	Acinetobacter nosocomialis M2	47.735	93.791	0.448
pilD	Acinetobacter baumannii D1279779	47.735	93.791	0.448
pilD	Neisseria gonorrhoeae MS11	46.021	94.444	0.435