Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BVL39_RS09235 Genome accession   NZ_CP019051
Coordinates   1843329..1843961 (-) Length   210 a.a.
NCBI ID   WP_000242750.1    Uniprot ID   -
Organism   Escherichia coli strain CRE1540     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838329..1848961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL39_RS09210 (BVL39_09300) yhfG 1838461..1838628 (+) 168 WP_000736860.1 YhfG family protein -
  BVL39_RS09215 (BVL39_09305) fic 1838618..1839220 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  BVL39_RS09220 (BVL39_09310) pabA 1839252..1839815 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  BVL39_RS09225 (BVL39_09315) argD 1839901..1841121 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  BVL39_RS09230 (BVL39_09320) yhfK 1841188..1843278 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  BVL39_RS09235 (BVL39_09325) crp 1843329..1843961 (-) 633 WP_000242750.1 cAMP-activated global transcriptional regulator CRP Regulator
  BVL39_RS09245 (BVL39_09335) yhfA 1844263..1844667 (+) 405 WP_001148908.1 OsmC family protein -
  BVL39_RS09250 (BVL39_09340) prkB 1844722..1845591 (-) 870 WP_001275838.1 phosphoribulokinase -
  BVL39_RS09255 (BVL39_09345) yheU 1845645..1845863 (-) 219 WP_000907085.1 YheU family protein -
  BVL39_RS09260 (BVL39_09350) yheT 1845857..1846879 (-) 1023 WP_000057405.1 hydrolase -
  BVL39_RS09265 (BVL39_09355) yheS 1846879..1848792 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23698.46 Da        Isoelectric Point: 7.8363

>NTDB_id=178451 BVL39_RS09235 WP_000242750.1 1843329..1843961(-) (crp) [Escherichia coli strain CRE1540]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=178451 BVL39_RS09235 WP_000242750.1 1843329..1843961(-) (crp) [Escherichia coli strain CRE1540]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGAC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

77.451

97.143

0.752
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467