Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   V471_RS09780 Genome accession   NZ_CP015283
Coordinates   2078620..2079621 (-) Length   333 a.a.
NCBI ID   WP_084871462.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2073620..2084621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS09755 (V471_09600) - 2074030..2074215 (+) 186 WP_002886071.1 hypothetical protein -
  V471_RS09760 (V471_09605) eno 2074369..2075673 (-) 1305 WP_002886048.1 surface-displayed alpha-enolase -
  V471_RS09765 (V471_09610) - 2075879..2076334 (+) 456 WP_049528980.1 YueI family protein -
  V471_RS09770 (V471_09615) - 2076365..2077480 (-) 1116 WP_049528977.1 glycerate kinase -
  V471_RS09775 (V471_09620) - 2077493..2078560 (-) 1068 WP_049528974.1 MmcQ/YjbR family DNA-binding protein -
  V471_RS09780 (V471_09625) ccpA 2078620..2079621 (-) 1002 WP_084871462.1 catabolite control protein A Regulator
  V471_RS09785 (V471_09630) - 2079936..2081021 (+) 1086 WP_014633399.1 M24 family metallopeptidase -
  V471_RS09790 (V471_09635) - 2081118..2081486 (-) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  V471_RS09795 (V471_09640) - 2081488..2082894 (-) 1407 WP_049528968.1 Cof-type HAD-IIB family hydrolase -
  V471_RS09800 (V471_09645) smpB 2083041..2083505 (-) 465 WP_014634133.1 SsrA-binding protein SmpB -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36645.56 Da        Isoelectric Point: 5.2857

>NTDB_id=178325 V471_RS09780 WP_084871462.1 2078620..2079621(-) (ccpA) [Streptococcus salivarius strain ATCC 25975]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSVTQLAKSNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINYPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=178325 V471_RS09780 WP_084871462.1 2078620..2079621(-) (ccpA) [Streptococcus salivarius strain ATCC 25975]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTTATTCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTACAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGATGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCTCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATAGACTATAAAGCTGCCGTTGAGGATTCTGTAACGCAGCTTGCTAAAAGTAATGAAAAGGTTGCTTTTGTATC
AGGACCACTAATTGATGATATTAATGGTAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTTGTCTTTGAAGCTAAATATAGCTATAAAGACGGCTTTGATTTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGGGAAGATGAATTGGCTGCGGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCTGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGATTCACCAATTACAAGTTATACACGTCCAAACCTTTCTAGTATTAATTATC
CTCTCTATGATTTAGGGGCGGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAGCTTGAAGAAAAAGATGTT
ATTCTTAATCATGGTCTTACCTTACGTCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.177

100

0.772

  ccpA Streptococcus pneumoniae D39

76.276

100

0.763

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556


Multiple sequence alignment