Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I596_RS04935 Genome accession   NZ_CP015249
Coordinates   1259432..1260847 (-) Length   471 a.a.
NCBI ID   WP_067645001.1    Uniprot ID   A0A160DS55
Organism   Dokdonella koreensis DS-123     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254432..1265847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I596_RS04915 (I596_1064) - 1254948..1255259 (-) 312 WP_083965381.1 methanol dehydrogenase [cytochrome c] subunit -
  I596_RS04920 (I596_1065) moxG 1255360..1255926 (-) 567 WP_067644996.1 cytochrome c(L), periplasmic -
  I596_RS04925 (I596_1066) moxJ 1255971..1256819 (-) 849 WP_067651468.1 methanol oxidation system protein MoxJ -
  I596_RS04930 (I596_1067) - 1256887..1258746 (-) 1860 WP_067644999.1 methanol/ethanol family PQQ-dependent dehydrogenase -
  I596_RS04935 (I596_1068) pilR 1259432..1260847 (-) 1416 WP_067645001.1 sigma-54 dependent transcriptional regulator Regulator
  I596_RS04940 (I596_1069) - 1260969..1262459 (-) 1491 WP_067645004.1 hypothetical protein -
  I596_RS04945 (I596_1071) - 1262585..1263139 (-) 555 WP_067645007.1 DUF3016 domain-containing protein -
  I596_RS04950 (I596_1072) - 1263272..1264567 (-) 1296 WP_067645010.1 sensor histidine kinase -
  I596_RS04955 (I596_1073) - 1264564..1265238 (-) 675 WP_067645013.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50661.31 Da        Isoelectric Point: 6.6226

>NTDB_id=178037 I596_RS04935 WP_067645001.1 1259432..1260847(-) (pilR) [Dokdonella koreensis DS-123]
MSKQLALVIDDERDIRELLTLTLGRMGLVVDTAANVAEARQRLSETRYTLCFTDMRLPDGSGQDIVEFVAGQYPETPIAM
ITAYGNVDAAVNALKAGAFDFVSKPVDINVLRRLVQTALKLGETKRAEQVASGSKLIGESAPMQELRATIAKIARSQAPV
YIAGESGVGKELVARLIHELGPRSATPFVPVNCGAIPSELMESEFFGHKKGSFTGAHADKDGLFQAAHGGTLFLDEVAEL
PVHMQVKLLRVIQEKAVRPIGARAEVPVDVRILSATHKNLARMVDLGAFRQDLFYRINVIELRVPPLRERRGDIPLLAGR
VLERLARDSGGAPARLGEDAAAALMTYEFPGNVRELENVLERAVALCEDNVIAAADLRLIPAQAGGSGEPAAAPPADAPA
GRPAPPPFASAPPQPLPDAAFNDLAAAVAETERAAIMKALEATRWNRTAAARHLGLTLRQLRYRLEKLGIE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=178037 I596_RS04935 WP_067645001.1 1259432..1260847(-) (pilR) [Dokdonella koreensis DS-123]
ATGAGCAAGCAACTTGCACTGGTCATAGACGACGAACGCGACATTCGCGAACTCCTGACGTTGACGCTCGGCCGCATGGG
TCTGGTGGTCGACACGGCGGCCAATGTCGCCGAAGCGCGCCAGCGCCTGTCCGAGACGCGCTACACGCTGTGCTTCACCG
ACATGCGGCTCCCGGATGGCTCGGGCCAGGACATCGTCGAGTTCGTCGCCGGCCAGTACCCGGAAACGCCGATCGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTCAATGCGCTCAAGGCCGGCGCGTTCGATTTCGTCTCCAAGCCGGTCGA
CATCAACGTGCTGCGCCGCCTGGTGCAGACCGCGCTGAAGCTCGGCGAGACCAAGCGCGCCGAGCAGGTCGCGAGCGGCA
GCAAGCTGATCGGCGAATCGGCGCCGATGCAGGAGCTGCGCGCGACGATCGCCAAGATCGCGCGCAGCCAGGCCCCGGTC
TACATCGCCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCTGGGTCCGCGCTCGGCCACACC
GTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCA
CCGGTGCCCACGCCGACAAGGACGGCCTGTTCCAGGCCGCCCACGGCGGCACGCTGTTCCTCGACGAGGTGGCCGAGCTG
CCGGTCCACATGCAGGTCAAGCTGCTGCGCGTGATCCAGGAAAAGGCGGTGCGCCCGATCGGTGCGCGCGCCGAGGTTCC
GGTCGACGTGCGCATCCTGTCGGCCACGCACAAGAACCTCGCGCGCATGGTCGACCTCGGCGCGTTCCGCCAGGACCTGT
TCTATCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGGCGCGGCGACATCCCGCTGCTGGCCGGCCGC
GTGCTCGAACGCCTGGCCCGCGACAGCGGCGGTGCACCCGCCCGCCTCGGCGAGGACGCGGCCGCGGCACTGATGACCTA
CGAGTTCCCCGGCAACGTGCGCGAGCTGGAGAACGTGCTCGAACGCGCCGTCGCCCTGTGCGAGGACAACGTCATCGCCG
CGGCCGACCTGCGGCTGATCCCGGCGCAGGCCGGCGGCAGCGGTGAACCGGCGGCCGCGCCACCCGCTGATGCCCCTGCC
GGACGACCGGCGCCGCCGCCGTTCGCGTCGGCACCTCCGCAGCCGCTGCCGGACGCCGCGTTCAACGACCTGGCCGCCGC
CGTCGCCGAGACCGAGCGAGCGGCGATCATGAAGGCACTGGAAGCCACGCGCTGGAACCGCACCGCGGCGGCGCGCCACC
TCGGCCTGACCCTGCGCCAGCTGCGCTACCGCCTCGAGAAGCTCGGCATCGAATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160DS55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.208

100

0.622
  pilR Acinetobacter baumannii strain A118

49.68

99.575

0.495

Multiple sequence alignment