Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BE939_RS04085 Genome accession   NZ_CP019008
Coordinates   601100..601732 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain Ecol_AZ159     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 596100..606732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE939_RS04060 (BE939_04245) yhfG 596232..596399 (+) 168 WP_000736858.1 YhfG family protein -
  BE939_RS04065 (BE939_04250) fic 596389..596991 (+) 603 WP_001280613.1 putative adenosine monophosphate-protein transferase Fic -
  BE939_RS04070 (BE939_04255) pabA 597023..597586 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  BE939_RS04075 (BE939_04260) argD 597672..598892 (+) 1221 WP_000963794.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  BE939_RS04080 (BE939_04265) yhfK 598959..601049 (-) 2091 WP_001296470.1 YccS/YhfK family putative transporter -
  BE939_RS04085 (BE939_04270) crp 601100..601732 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  BE939_RS04095 (BE939_04280) yhfA 602034..602438 (+) 405 WP_001148908.1 OsmC family protein -
  BE939_RS04100 (BE939_04285) prkB 602493..603362 (-) 870 WP_001274684.1 phosphoribulokinase -
  BE939_RS04105 (BE939_04290) yheU 603416..603634 (-) 219 WP_000907085.1 YheU family protein -
  BE939_RS04110 (BE939_04295) yheT 603628..604650 (-) 1023 WP_000057364.1 hydrolase -
  BE939_RS04115 (BE939_04300) yheS 604650..606563 (-) 1914 WP_000634830.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=177928 BE939_RS04085 WP_000242755.1 601100..601732(-) (crp) [Escherichia coli strain Ecol_AZ159]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=177928 BE939_RS04085 WP_000242755.1 601100..601732(-) (crp) [Escherichia coli strain Ecol_AZ159]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467