Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SporoP8_RS09305 Genome accession   NZ_CP015207
Coordinates   1870886..1871398 (-) Length   170 a.a.
NCBI ID   WP_085132249.1    Uniprot ID   A0A2G5WQV3
Organism   Sporosarcina ureae strain P8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1865886..1876398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP8_RS09285 (SporoP8_09210) rplI 1866984..1867430 (-) 447 WP_085132246.1 50S ribosomal protein L9 -
  SporoP8_RS09290 (SporoP8_09215) - 1867430..1869403 (-) 1974 WP_085132247.1 DHH family phosphoesterase -
  SporoP8_RS09295 (SporoP8_09220) - 1869415..1870371 (-) 957 WP_085132248.1 DUF2232 domain-containing protein -
  SporoP8_RS09300 (SporoP8_09225) rpsR 1870604..1870840 (-) 237 WP_029054370.1 30S ribosomal protein S18 -
  SporoP8_RS09305 (SporoP8_09230) ssbA 1870886..1871398 (-) 513 WP_085132249.1 single-stranded DNA-binding protein Machinery gene
  SporoP8_RS09310 (SporoP8_09235) rpsF 1871446..1871733 (-) 288 WP_085132250.1 30S ribosomal protein S6 -
  SporoP8_RS09315 (SporoP8_09240) - 1871889..1872431 (+) 543 WP_085132251.1 DUF3267 domain-containing protein -
  SporoP8_RS09320 (SporoP8_09245) ychF 1872659..1873759 (-) 1101 WP_085132252.1 redox-regulated ATPase YchF -
  SporoP8_RS09325 (SporoP8_09250) - 1873854..1874051 (-) 198 WP_085132253.1 DUF951 domain-containing protein -
  SporoP8_RS09330 (SporoP8_09255) - 1874032..1874970 (-) 939 WP_232319131.1 mechanosensitive ion channel family protein -
  SporoP8_RS09335 (SporoP8_09260) yyaC 1875084..1875725 (+) 642 WP_085132255.1 spore protease YyaC -
  SporoP8_RS09340 (SporoP8_09265) - 1875636..1876340 (-) 705 WP_085132256.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18740.59 Da        Isoelectric Point: 4.7621

>NTDB_id=177539 SporoP8_RS09305 WP_085132249.1 1870886..1871398(-) (ssbA) [Sporosarcina ureae strain P8]
MINRVVLVGRLTKDPELKYTQTGIAVTRFTLAVNRAFANAQGEREADFITCVAWRKQAENIANYLRKGSLAGVDGRIQTG
SFEGQDGKRVYTTEVVADSTQFLEPKGGNTERQQTPSYGGAPSYNAPSQDQGYNNQQSYQPNQQNMTRVDNDPFQPGGGP
IEVTDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=177539 SporoP8_RS09305 WP_085132249.1 1870886..1871398(-) (ssbA) [Sporosarcina ureae strain P8]
ATGATAAACCGTGTCGTTTTAGTTGGCCGATTAACAAAAGATCCTGAGCTGAAGTATACACAAACTGGAATTGCTGTAAC
ACGTTTTACACTGGCAGTGAACCGCGCGTTCGCTAATGCCCAAGGAGAACGGGAAGCGGATTTCATCACATGTGTAGCTT
GGCGTAAACAGGCTGAGAATATCGCGAATTACTTACGAAAAGGAAGTCTTGCCGGAGTGGATGGTCGTATACAGACGGGC
AGCTTTGAAGGTCAAGACGGTAAGCGTGTTTACACGACAGAAGTTGTTGCGGATAGTACCCAATTCCTGGAGCCGAAAGG
TGGCAATACAGAACGTCAGCAAACACCATCTTATGGTGGAGCGCCTTCTTATAACGCACCTTCCCAAGATCAAGGATACA
ATAACCAGCAATCCTACCAACCGAATCAGCAAAATATGACACGTGTCGATAATGATCCATTCCAGCCAGGCGGCGGTCCG
ATTGAAGTAACAGATGACGACTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G5WQV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.322

100

0.576
  ssb Latilactobacillus sakei subsp. sakei 23K

51.429

100

0.529
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.353

0.382

Multiple sequence alignment