Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A4H00_RS03905 Genome accession   NZ_CP015196
Coordinates   782248..783009 (+) Length   253 a.a.
NCBI ID   WP_067087518.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 777248..788009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS03870 - 778073..779059 (+) 987 WP_067087512.1 IS30 family transposase -
  A4H00_RS03890 - 779621..780154 (-) 534 WP_237334214.1 YoaK family protein -
  A4H00_RS03895 rlmH 780180..780659 (-) 480 WP_067087514.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  A4H00_RS03900 htrA 780998..782191 (+) 1194 WP_067087516.1 S1C family serine protease Regulator
  A4H00_RS03905 spo0J 782248..783009 (+) 762 WP_067087518.1 ParB/RepB/Spo0J family partition protein Regulator
  A4H00_RS03910 dnaA 783240..784565 (+) 1326 WP_418080453.1 chromosomal replication initiator protein DnaA -
  A4H00_RS03915 dnaN 784714..785850 (+) 1137 WP_067087522.1 DNA polymerase III subunit beta -
  A4H00_RS03920 - 786184..787092 (+) 909 WP_067087524.1 diacylglycerol/lipid kinase family protein -
  A4H00_RS03925 - 787095..787292 (+) 198 WP_067087526.1 DUF951 domain-containing protein -
  A4H00_RS03930 - 787479..787667 (+) 189 WP_067087528.1 hypothetical protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28764.18 Da        Isoelectric Point: 8.3472

>NTDB_id=177433 A4H00_RS03905 WP_067087518.1 782248..783009(+) (spo0J) [Streptococcus marmotae strain HTS5]
MEELRYIAINDITPNPYQPRVHFDQEKLEELAQSIKENGLIQPLIVRKSAIIGYELLAGERRLRASQLAGLTSVPVVIKN
LSDDELLYQAIIENLQRSDLNPIEEAKSYQRLIEKNLTHDEIAQIMGKSRPYITNILRLLQLSDPLISAVEEGILSQGHA
RLLIPYSRKEQEKWLTTILQKEMSVRSLEHALSKKKTTAKKKENIFVKDIESTLSKVLGSGISIEQKKNGSGTLTISFKN
TEELERIIHTITN

Nucleotide


Download         Length: 762 bp        

>NTDB_id=177433 A4H00_RS03905 WP_067087518.1 782248..783009(+) (spo0J) [Streptococcus marmotae strain HTS5]
ATGGAAGAACTACGCTACATTGCAATTAATGACATTACACCAAATCCTTATCAACCCAGAGTCCATTTTGACCAAGAAAA
ACTAGAAGAGCTGGCGCAATCAATTAAAGAAAACGGTCTAATTCAACCTTTAATTGTCAGAAAATCGGCGATTATTGGCT
ATGAATTACTAGCAGGAGAACGCAGGTTGCGAGCCAGTCAACTAGCAGGTTTGACAAGTGTTCCTGTAGTGATTAAAAAT
TTATCCGATGATGAGCTACTTTATCAAGCGATTATTGAAAATTTGCAACGCTCTGATCTGAATCCAATTGAAGAAGCAAA
ATCCTATCAACGCTTGATTGAAAAAAATTTAACTCATGACGAAATCGCTCAGATTATGGGAAAATCACGGCCATACATCA
CAAATATCCTTCGTTTACTACAACTATCAGATCCACTTATCTCAGCAGTTGAAGAAGGGATTTTGTCACAAGGACATGCC
CGATTGTTAATTCCTTATTCAAGAAAAGAGCAAGAAAAGTGGCTTACCACCATTCTTCAAAAGGAGATGAGCGTTCGCTC
TTTAGAACATGCTCTTTCTAAGAAAAAGACAACTGCTAAGAAAAAAGAAAATATCTTCGTAAAAGACATCGAGTCAACTC
TTAGCAAAGTATTAGGTTCAGGAATTTCTATTGAGCAGAAAAAAAATGGGAGTGGTACCCTTACTATCTCTTTTAAAAAT
ACAGAAGAATTGGAACGAATTATCCACACAATAACAAACTAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(147-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.331

100

0.545

Multiple sequence alignment