Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IEC338SC_RS03505 Genome accession   NZ_CP015145
Coordinates   728313..729725 (-) Length   470 a.a.
NCBI ID   WP_063097969.1    Uniprot ID   A0AB33B7U3
Organism   Acinetobacter pittii strain IEC338SC     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 723313..734725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS03490 (IEC338SC_0703) lptG 724365..725435 (+) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -
  IEC338SC_RS03495 (IEC338SC_0704) gpmI 725562..727109 (+) 1548 WP_017400161.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IEC338SC_RS03500 (IEC338SC_0705) ctpA 727125..728309 (+) 1185 WP_063097968.1 S41 family peptidase -
  IEC338SC_RS03505 (IEC338SC_0706) pilR 728313..729725 (-) 1413 WP_063097969.1 sigma-54-dependent transcriptional regulator Regulator
  IEC338SC_RS03510 (IEC338SC_0707) pilS 729750..731318 (-) 1569 WP_063097970.1 sensor histidine kinase Regulator
  IEC338SC_RS03515 (IEC338SC_0708) gacA 731329..731964 (-) 636 WP_002121174.1 response regulator -
  IEC338SC_RS03520 (IEC338SC_0709) pbpG 732177..733223 (+) 1047 WP_155726860.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IEC338SC_RS03525 (IEC338SC_0710) thrC 733330..734469 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52626.64 Da        Isoelectric Point: 6.3452

>NTDB_id=177092 IEC338SC_RS03505 WP_063097969.1 728313..729725(-) (pilR) [Acinetobacter pittii strain IEC338SC]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKVRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=177092 IEC338SC_RS03505 WP_063097969.1 728313..729725(-) (pilR) [Acinetobacter pittii strain IEC338SC]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTTTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCTGGAGCTTTTGATTTTGTCAGCAAACC
AATTAACCAAATTCATTTAGATCAGCTGTTAAAAAAGGCGCTCAACCAGCCAAAACCAGAGCATGAATTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCGCCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACAGGCAAAGAAGTTGTTGCTAATCTGATTCACCGTTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGAGCGACTCAAGATAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGGTTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGCAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTGATGGATATTATGTTGCCACCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCACCTCCTCTTAGAGGGAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTAAATGCTCTGAACATGACGCATTGGAATCGAACTTTGGCCGCTAAAAAGCTAGGAATGACATTCCGTTCTTTAC
GCTATCGACTCAAAAAATTTGGCTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.624

100

0.862
  pilR Pseudomonas aeruginosa PAK

51.316

97.021

0.498

Multiple sequence alignment