Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IEC338SC_RS03510 Genome accession   NZ_CP015145
Coordinates   729750..731318 (-) Length   522 a.a.
NCBI ID   WP_063097970.1    Uniprot ID   A0AB33B979
Organism   Acinetobacter pittii strain IEC338SC     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 724750..736318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS03495 (IEC338SC_0704) gpmI 725562..727109 (+) 1548 WP_017400161.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IEC338SC_RS03500 (IEC338SC_0705) ctpA 727125..728309 (+) 1185 WP_063097968.1 S41 family peptidase -
  IEC338SC_RS03505 (IEC338SC_0706) pilR 728313..729725 (-) 1413 WP_063097969.1 sigma-54-dependent transcriptional regulator Regulator
  IEC338SC_RS03510 (IEC338SC_0707) pilS 729750..731318 (-) 1569 WP_063097970.1 sensor histidine kinase Regulator
  IEC338SC_RS03515 (IEC338SC_0708) gacA 731329..731964 (-) 636 WP_002121174.1 response regulator -
  IEC338SC_RS03520 (IEC338SC_0709) pbpG 732177..733223 (+) 1047 WP_155726860.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IEC338SC_RS03525 (IEC338SC_0710) thrC 733330..734469 (-) 1140 WP_002048893.1 threonine synthase -
  IEC338SC_RS03530 (IEC338SC_0711) hom 734524..735825 (-) 1302 WP_002121263.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59079.61 Da        Isoelectric Point: 6.1296

>NTDB_id=177093 IEC338SC_RS03510 WP_063097970.1 729750..731318(-) (pilS) [Acinetobacter pittii strain IEC338SC]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESQLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDVEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=177093 IEC338SC_RS03510 WP_063097970.1 729750..731318(-) (pilS) [Acinetobacter pittii strain IEC338SC]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTGCAACAACCCACTCTATATTCTT
ACACACTACTCGGCTATTCGCTTTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCCACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCCAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCCGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATCGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCAACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTAGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGACGCACAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTGGGACAACTCTCAGCAAGT
ATTGCCCATGAAATCCGTAATCCTCTTGCAGCCATAGTTCAAGCAAATGAATTGCTCAAAGATAGTGATGTGGAGCAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGTATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAACGACTTCTTAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGTTAATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGATTCACCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.253

100

0.943

Multiple sequence alignment