Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   A4W93_RS24255 Genome accession   NZ_CP015118
Coordinates   5308742..5309965 (-) Length   407 a.a.
NCBI ID   WP_085753057.1    Uniprot ID   A0A1W6LER5
Organism   Piscinibacter gummiphilus strain NS21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5303742..5314965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W93_RS24235 (A4W93_24125) - 5304778..5305044 (-) 267 WP_085753053.1 PP0621 family protein -
  A4W93_RS24240 (A4W93_24130) - 5305062..5305904 (-) 843 WP_085753054.1 inner membrane protein YpjD -
  A4W93_RS24245 (A4W93_24135) ffh 5305953..5307323 (+) 1371 WP_085753055.1 signal recognition particle protein -
  A4W93_RS24250 (A4W93_24140) - 5307409..5308146 (+) 738 WP_085753056.1 DUF2726 domain-containing protein -
  A4W93_RS24255 (A4W93_24145) pilA 5308742..5309965 (-) 1224 WP_085753057.1 signal recognition particle-docking protein FtsY Machinery gene
  A4W93_RS24265 (A4W93_24155) - 5310160..5311074 (-) 915 WP_085753058.1 NmrA family NAD(P)-binding protein -
  A4W93_RS24270 (A4W93_24160) - 5311220..5313859 (-) 2640 WP_085753059.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42318.68 Da        Isoelectric Point: 5.1793

>NTDB_id=176846 A4W93_RS24255 WP_085753057.1 5308742..5309965(-) (pilA) [Piscinibacter gummiphilus strain NS21]
MFSFFKKKSPPSDAPPAAAPAVDTGEEKRSWVDRLRSGIGLGDTPVEATPAPAPAPAAPVIPAPAPAPVVAAPVPVQAPA
PVPVPAPVPAEPPVSAEAVAERRTWLDKLRTGLRKTGSSITQVFTGTQIDDALYEDLEAALLMADAGVKATEFLLKDLKW
RVKEAKATDPAAVKGLLADAITDLLAPLEKPLEIGEATPTVMMVVGVNGAGKTTSIGKLTRHLADGGQKVLLAAADTFRA
AAREQLAVWADRADKPGAPAVAVEIVSQESGDPSSVSFDAVVAGKSRGCDVVIADTAGRLPTQLHLMEELKKIKRVIGKA
QDGAPHEVLLVVDGNTGQNALQQVKAFDDALQLTGLIITKLDGTAKGGVLAAIARERPVPVYFVGVGEKLEDLQTFSARE
FAQAVLS

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=176846 A4W93_RS24255 WP_085753057.1 5308742..5309965(-) (pilA) [Piscinibacter gummiphilus strain NS21]
ATGTTCAGTTTTTTCAAGAAGAAATCCCCCCCGTCCGACGCGCCGCCGGCCGCCGCGCCCGCCGTCGACACGGGGGAGGA
GAAGCGCAGCTGGGTCGACCGGCTGCGCAGTGGCATCGGACTGGGGGACACGCCCGTCGAGGCCACGCCCGCGCCCGCGC
CTGCGCCGGCCGCCCCCGTCATTCCGGCGCCGGCCCCCGCGCCCGTGGTCGCTGCGCCGGTCCCGGTTCAGGCCCCGGCT
CCGGTTCCGGTTCCGGCACCCGTGCCCGCCGAACCACCGGTGTCCGCCGAAGCCGTGGCCGAACGCCGCACCTGGCTCGA
CAAGCTGCGCACCGGGCTGCGCAAGACCGGCTCCAGCATCACGCAGGTGTTCACCGGCACGCAGATCGACGATGCCCTCT
ATGAAGACCTCGAGGCCGCGCTGCTCATGGCGGACGCCGGCGTCAAGGCCACGGAGTTCCTGCTGAAGGACCTGAAGTGG
CGGGTGAAGGAGGCGAAGGCCACCGACCCGGCCGCGGTGAAGGGGCTGCTGGCCGATGCCATCACCGACCTGCTGGCGCC
CCTCGAGAAGCCGCTCGAGATCGGCGAGGCCACGCCCACCGTGATGATGGTGGTGGGGGTCAACGGTGCCGGCAAGACGA
CGAGCATCGGCAAGCTCACGCGCCATCTGGCCGACGGCGGTCAGAAGGTGTTGCTGGCTGCGGCCGACACGTTCCGCGCC
GCCGCCCGCGAGCAGCTCGCGGTGTGGGCCGACCGCGCCGACAAGCCGGGTGCGCCGGCCGTGGCGGTGGAGATCGTGTC
GCAGGAAAGCGGCGATCCGTCGTCGGTGAGCTTCGATGCCGTGGTGGCGGGCAAGTCCCGCGGCTGCGACGTGGTGATCG
CCGACACCGCGGGCCGCCTGCCCACGCAGCTCCACCTGATGGAGGAGCTGAAGAAGATCAAGCGCGTGATCGGCAAGGCC
CAGGACGGGGCGCCGCACGAGGTGCTGCTGGTGGTCGACGGCAACACCGGGCAAAACGCGCTGCAGCAGGTCAAGGCGTT
CGACGATGCGCTTCAGCTCACCGGGCTGATCATCACGAAGCTCGATGGCACGGCGAAGGGTGGGGTGCTGGCGGCCATCG
CGCGCGAGCGGCCCGTCCCGGTGTACTTCGTGGGCGTGGGTGAGAAGCTGGAAGACCTGCAGACCTTCAGCGCGCGTGAG
TTCGCCCAGGCCGTCCTGAGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-180)

SRP54-type protein, GTPase domain (SRP54)

(199-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6LER5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.136

100

0.484

Multiple sequence alignment