Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   A4W93_RS24095 Genome accession   NZ_CP015118
Coordinates   5273389..5273778 (-) Length   129 a.a.
NCBI ID   WP_085753029.1    Uniprot ID   A0A1W6LES1
Organism   Piscinibacter gummiphilus strain NS21     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5268389..5278778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W93_RS24080 (A4W93_23970) - 5270000..5272309 (-) 2310 WP_085753027.1 methyl-accepting chemotaxis protein -
  A4W93_RS24085 (A4W93_23975) - 5272380..5272898 (-) 519 WP_085753028.1 chemotaxis protein CheW -
  A4W93_RS24090 (A4W93_23980) - 5272946..5273311 (-) 366 WP_056665926.1 response regulator transcription factor -
  A4W93_RS24095 (A4W93_23985) pilG 5273389..5273778 (-) 390 WP_085753029.1 PleD family two-component system response regulator Regulator
  A4W93_RS24100 (A4W93_23990) - 5273869..5274033 (-) 165 WP_085753030.1 rubredoxin -
  A4W93_RS24105 (A4W93_23995) - 5274217..5275158 (+) 942 WP_085753031.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  A4W93_RS24110 (A4W93_24000) hemL 5275148..5276464 (+) 1317 WP_085753032.1 glutamate-1-semialdehyde 2,1-aminomutase -
  A4W93_RS24115 (A4W93_24005) mpl 5276506..5277858 (+) 1353 WP_085753033.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -
  A4W93_RS24120 (A4W93_24010) - 5277868..5278743 (-) 876 WP_085753034.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14238.49 Da        Isoelectric Point: 5.8612

>NTDB_id=176845 A4W93_RS24095 WP_085753029.1 5273389..5273778(-) (pilG) [Piscinibacter gummiphilus strain NS21]
MSNEAAAGIKVLVIDDSNTIRRSADIFLKQGGYDVLLAEDGFDALAKVNDLHPDLIFCDILMPRLDGYQTCAIIKRNPTF
SGVPVIMLSSKDGLFDKARGRMVGAEAYLTKPFTKDQLLQAVEQYRLKA

Nucleotide


Download         Length: 390 bp        

>NTDB_id=176845 A4W93_RS24095 WP_085753029.1 5273389..5273778(-) (pilG) [Piscinibacter gummiphilus strain NS21]
GTGAGCAATGAAGCCGCAGCAGGCATCAAGGTGCTGGTCATCGACGACAGCAACACCATCCGGCGCAGCGCCGACATCTT
CCTGAAGCAGGGCGGCTACGACGTCCTGCTCGCCGAGGATGGTTTCGACGCGCTCGCGAAGGTCAACGACCTGCACCCCG
ACCTGATCTTCTGCGACATCCTGATGCCGCGCCTGGACGGGTACCAGACCTGCGCGATCATCAAGCGCAACCCCACCTTC
TCCGGCGTGCCGGTGATCATGCTGTCCTCGAAGGACGGCCTGTTCGACAAGGCGCGCGGGCGCATGGTGGGCGCCGAGGC
CTACCTCACCAAGCCTTTCACGAAAGACCAGTTGCTTCAGGCCGTCGAGCAGTACCGGCTGAAGGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6LES1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.377

94.574

0.543
  pilH Synechocystis sp. PCC 6803

42.982

88.372

0.38
  vicR Streptococcus mutans UA159

41.379

89.922

0.372

Multiple sequence alignment