Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AMD27_RS14150 Genome accession   NZ_CP015110
Coordinates   2945536..2946168 (+) Length   210 a.a.
NCBI ID   WP_067661680.1    Uniprot ID   A0A143G852
Organism   Acinetobacter sp. TGL-Y2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2940536..2951168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS14140 (AMD27_14145) - 2942408..2943193 (-) 786 WP_067661676.1 NAD-dependent epimerase/dehydratase family protein -
  AMD27_RS14145 (AMD27_14150) recG 2943246..2945291 (+) 2046 WP_067661678.1 ATP-dependent DNA helicase RecG -
  AMD27_RS14150 (AMD27_14155) comF 2945536..2946168 (+) 633 WP_067661680.1 ComF family protein Machinery gene
  AMD27_RS14155 (AMD27_14160) - 2946266..2946691 (-) 426 WP_067661681.1 NUDIX hydrolase -
  AMD27_RS14160 (AMD27_14165) - 2946688..2947287 (-) 600 WP_067661683.1 TIGR00730 family Rossman fold protein -
  AMD27_RS14165 (AMD27_14170) - 2947446..2948459 (+) 1014 WP_067661685.1 CorA family divalent cation transporter -
  AMD27_RS14170 (AMD27_14175) - 2948600..2948887 (-) 288 WP_067661687.1 STAS domain-containing protein -
  AMD27_RS14175 (AMD27_14180) - 2948905..2949537 (-) 633 WP_067661689.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  AMD27_RS14180 (AMD27_14185) - 2949556..2950227 (-) 672 WP_067661691.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AMD27_RS14185 (AMD27_14190) mlaE 2950227..2951006 (-) 780 WP_067661693.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24148.42 Da        Isoelectric Point: 9.2752

>NTDB_id=176719 AMD27_RS14150 WP_067661680.1 2945536..2946168(+) (comF) [Acinetobacter sp. TGL-Y2]
MLKILKEMCQSSVQHLFPCQLCGIDHAQSHSLCADCWNQLPWLKARIVRHERSIQIALHYDFPIDRIIQKYKYEQDLHYQ
TLLAQSLLTLRFSKVQAIVPMPISNERLAERGYNQMLIIAKLVSKQLGIPVWQPVIRAAQHSQKGLSRVERMATIETQFQ
IIRAERRKFKKVLMIDDVVTTGSSMHALAQALEKLGCQQIEMACIAAAEQ

Nucleotide


Download         Length: 633 bp        

>NTDB_id=176719 AMD27_RS14150 WP_067661680.1 2945536..2946168(+) (comF) [Acinetobacter sp. TGL-Y2]
ATGCTAAAAATATTAAAAGAAATGTGTCAGAGCAGCGTGCAACACTTATTTCCCTGCCAGCTCTGCGGCATCGATCATGC
GCAATCACATTCACTCTGCGCAGATTGCTGGAATCAACTCCCTTGGCTCAAAGCACGTATTGTTCGGCATGAGCGATCCA
TTCAAATTGCCTTACATTATGACTTCCCCATCGACCGAATCATTCAGAAATATAAATATGAACAAGACTTGCATTATCAA
ACCCTTCTAGCCCAGAGCTTACTGACGCTCCGCTTCTCAAAAGTTCAAGCCATTGTCCCAATGCCTATCTCAAATGAACG
CTTGGCTGAGCGGGGTTACAACCAAATGTTGATTATTGCGAAGCTAGTGTCTAAACAACTGGGCATTCCCGTTTGGCAAC
CAGTGATTCGTGCCGCACAACATTCACAAAAAGGACTCTCTCGGGTTGAGCGCATGGCGACGATTGAAACGCAATTTCAA
ATTATTCGGGCTGAGCGACGCAAGTTCAAAAAGGTACTGATGATTGATGACGTCGTGACTACAGGAAGCTCCATGCACGC
CTTGGCACAAGCTTTAGAAAAACTGGGTTGTCAACAGATTGAAATGGCGTGTATTGCAGCAGCTGAGCAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143G852

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.135

99.048

0.586
  comF Acinetobacter baumannii D1279779

58.654

99.048

0.581

Multiple sequence alignment