Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AMD27_RS10245 Genome accession   NZ_CP015110
Coordinates   2141150..2141863 (+) Length   237 a.a.
NCBI ID   WP_067659979.1    Uniprot ID   A0A143G4S8
Organism   Acinetobacter sp. TGL-Y2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2136150..2146863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS10225 (AMD27_10230) - 2136300..2136782 (+) 483 WP_067659966.1 rhodanese-like domain-containing protein -
  AMD27_RS10230 (AMD27_10235) - 2137039..2137971 (+) 933 WP_067659971.1 family 2A encapsulin nanocompartment shell protein -
  AMD27_RS10235 (AMD27_10240) - 2137946..2139964 (+) 2019 WP_067659973.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  AMD27_RS10240 (AMD27_10245) - 2140577..2140999 (-) 423 WP_067659976.1 OsmC family protein -
  AMD27_RS10245 (AMD27_10250) crp 2141150..2141863 (+) 714 WP_067659979.1 cAMP-activated global transcriptional regulator CRP Regulator
  AMD27_RS10250 (AMD27_10255) - 2142022..2143071 (+) 1050 WP_067659982.1 NADP(H)-dependent aldo-keto reductase -
  AMD27_RS10255 (AMD27_10260) - 2143199..2143975 (-) 777 WP_067659984.1 M48 family metallopeptidase -
  AMD27_RS10260 (AMD27_10265) - 2144088..2144399 (-) 312 WP_067659987.1 hypothetical protein -
  AMD27_RS10270 (AMD27_10275) - 2144566..2145885 (-) 1320 WP_067659993.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26483.23 Da        Isoelectric Point: 4.9164

>NTDB_id=176712 AMD27_RS10245 WP_067659979.1 2141150..2141863(+) (crp) [Acinetobacter sp. TGL-Y2]
MTSTFSQLSTDALSPGQLPESVKALLKRAHINRFPKRTPIIDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFETNPQRTAEVRTRDVCEIAEISYANFHEVSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSGQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLDAVNAVEEDSTTKDDE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=176712 AMD27_RS10245 WP_067659979.1 2141150..2141863(+) (crp) [Acinetobacter sp. TGL-Y2]
ATGACTTCTACTTTTTCACAACTGAGTACAGATGCTTTGTCACCAGGTCAACTACCTGAATCTGTCAAAGCTTTACTTAA
GCGCGCCCACATCAATCGCTTCCCAAAACGCACACCTATTATTGATGCTGGCACGGAGTCGAAATCTCTGTATCTAATTT
TAAAAGGGTCGGTATCGATTATTTTACGTGAAGATGATGACCGTGAAATTGTTGTTGCATATTTGAACCCTGGGGACTTT
TTTGGCGAAATGGGATTATTTGAGACCAACCCACAACGTACTGCGGAAGTAAGAACTCGCGACGTTTGTGAGATTGCTGA
AATCTCATATGCAAATTTCCACGAAGTAAGCAAACAATATCCTGATTTGAGCTACGCTGTGTTCGCTCAGCTGGTTCGCC
GCCTGAAAAACACCACACGTAAAGTGACTGACTTAGCGTTCATTGATGTTTCAGGTCGTATTGCACGTTGTCTAATTGAT
CTGTCAGGTCAGCCTGAAGCAATGATCCTCCCGAATGGTCGTCAAATCCGTATTACGCGTCAAGAAATTGGTCGTATTGT
GGGATGTTCACGTGAAATGGTCGGCCGTGTTCTAAAAACGCTTGAAGAGCAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATCTTTGATGTGTCATTAGATGCTGTAAATGCAGTGGAAGAAGACTCCACAACCAAAGATGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143G4S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.304

97.046

0.886
  crp Vibrio cholerae strain A1552

47.317

86.498

0.409
  crp Haemophilus influenzae Rd KW20

47.668

81.435

0.388

Multiple sequence alignment