Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | AMD27_RS01655 | Genome accession | NZ_CP015110 |
| Coordinates | 364854..365399 (+) | Length | 181 a.a. |
| NCBI ID | WP_081405900.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. TGL-Y2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 359854..370399
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD27_RS01650 (AMD27_01650) | - | 360407..364873 (+) | 4467 | WP_067655464.1 | PilC/PilY family type IV pilus protein | - |
| AMD27_RS01655 (AMD27_01655) | comE | 364854..365399 (+) | 546 | WP_081405900.1 | type IV pilin protein | Machinery gene |
| AMD27_RS01660 (AMD27_01660) | - | 365393..365860 (+) | 468 | WP_067655471.1 | type IV pilin protein | - |
| AMD27_RS01665 (AMD27_01665) | rpsP | 366005..366262 (+) | 258 | WP_067655474.1 | 30S ribosomal protein S16 | - |
| AMD27_RS01670 (AMD27_01670) | rimM | 366291..366839 (+) | 549 | WP_067655477.1 | ribosome maturation factor RimM | - |
| AMD27_RS01675 (AMD27_01675) | trmD | 366883..367623 (+) | 741 | WP_067655480.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AMD27_RS01680 (AMD27_01680) | rplS | 367765..368142 (+) | 378 | WP_067655482.1 | 50S ribosomal protein L19 | - |
| AMD27_RS01685 (AMD27_01685) | - | 368252..369217 (-) | 966 | WP_067655485.1 | lipase family alpha/beta hydrolase | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20152.01 Da Isoelectric Point: 9.8474
>NTDB_id=176702 AMD27_RS01655 WP_081405900.1 364854..365399(+) (comE) [Acinetobacter sp. TGL-Y2]
MKSMRNKNWTKRISQQGFTLIELMIVIVIVAILAAIAIPSYQSYARRAIAGQAQQEIQKLAEQLERHKGKNFSYLGFEPS
YLYKDNSDNIIGYSTTNAQLNLPLESTGAAVKYIISIRDGINNTKLLTDTTALGQRWVIKAESRDPKNFTFLMTSTGVQC
KNTTQANVSYTGCGTGGENTW
MKSMRNKNWTKRISQQGFTLIELMIVIVIVAILAAIAIPSYQSYARRAIAGQAQQEIQKLAEQLERHKGKNFSYLGFEPS
YLYKDNSDNIIGYSTTNAQLNLPLESTGAAVKYIISIRDGINNTKLLTDTTALGQRWVIKAESRDPKNFTFLMTSTGVQC
KNTTQANVSYTGCGTGGENTW
Nucleotide
Download Length: 546 bp
>NTDB_id=176702 AMD27_RS01655 WP_081405900.1 364854..365399(+) (comE) [Acinetobacter sp. TGL-Y2]
ATGAAAAGTATGCGCAATAAAAATTGGACCAAGCGAATATCTCAGCAGGGATTTACATTAATTGAATTAATGATTGTGAT
TGTAATTGTGGCAATCCTTGCCGCAATTGCAATTCCAAGTTATCAGAGCTACGCTCGAAGAGCCATAGCTGGTCAGGCAC
AGCAGGAAATACAAAAGCTGGCAGAGCAGTTAGAGCGTCATAAAGGTAAAAATTTTAGTTATTTAGGATTTGAACCTAGC
TATCTCTATAAAGATAATAGCGACAATATTATTGGTTATAGTACAACTAATGCGCAATTAAACCTGCCGTTAGAGAGTAC
AGGGGCAGCAGTTAAATATATTATTTCAATTCGGGATGGGATAAATAACACAAAACTACTAACTGATACGACTGCTTTAG
GACAAAGATGGGTCATTAAAGCAGAAAGCCGGGATCCTAAAAATTTTACCTTTCTTATGACAAGTACAGGGGTCCAGTGT
AAAAATACTACTCAAGCAAATGTATCTTACACAGGGTGTGGAACTGGGGGGGAGAACACATGGTAA
ATGAAAAGTATGCGCAATAAAAATTGGACCAAGCGAATATCTCAGCAGGGATTTACATTAATTGAATTAATGATTGTGAT
TGTAATTGTGGCAATCCTTGCCGCAATTGCAATTCCAAGTTATCAGAGCTACGCTCGAAGAGCCATAGCTGGTCAGGCAC
AGCAGGAAATACAAAAGCTGGCAGAGCAGTTAGAGCGTCATAAAGGTAAAAATTTTAGTTATTTAGGATTTGAACCTAGC
TATCTCTATAAAGATAATAGCGACAATATTATTGGTTATAGTACAACTAATGCGCAATTAAACCTGCCGTTAGAGAGTAC
AGGGGCAGCAGTTAAATATATTATTTCAATTCGGGATGGGATAAATAACACAAAACTACTAACTGATACGACTGCTTTAG
GACAAAGATGGGTCATTAAAGCAGAAAGCCGGGATCCTAAAAATTTTACCTTTCTTATGACAAGTACAGGGGTCCAGTGT
AAAAATACTACTCAAGCAAATGTATCTTACACAGGGTGTGGAACTGGGGGGGAGAACACATGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
52.727 |
91.16 |
0.481 |
| pilY2 | Acinetobacter baumannii D1279779 |
46.746 |
93.37 |
0.436 |