Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AMD27_RS00710 Genome accession   NZ_CP015110
Coordinates   167851..169170 (-) Length   439 a.a.
NCBI ID   WP_067654993.1    Uniprot ID   A0A145WKM7
Organism   Acinetobacter sp. TGL-Y2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 162851..174170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS00680 (AMD27_00680) - 162887..163504 (-) 618 WP_067654981.1 hypothetical protein -
  AMD27_RS00685 (AMD27_00685) - 163643..164020 (-) 378 WP_067654984.1 RcnB family protein -
  AMD27_RS00690 (AMD27_00690) - 164230..164775 (-) 546 WP_150115793.1 glutathione peroxidase -
  AMD27_RS18960 - 164924..165247 (-) 324 WP_228140686.1 hypothetical protein -
  AMD27_RS18965 - 165287..165451 (-) 165 WP_228140687.1 hypothetical protein -
  AMD27_RS00700 (AMD27_00700) - 165877..166770 (+) 894 WP_067654987.1 DMT family transporter -
  AMD27_RS00705 (AMD27_00705) - 167239..167808 (-) 570 WP_067654989.1 Sua5/YciO/YrdC/YwlC family protein -
  AMD27_RS00710 (AMD27_00710) dprA 167851..169170 (-) 1320 WP_067654993.1 DNA-processing protein DprA Machinery gene
  AMD27_RS00715 (AMD27_00715) tsaP 169185..170336 (-) 1152 WP_067654995.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AMD27_RS00720 (AMD27_00720) def 170459..170989 (+) 531 WP_067654998.1 peptide deformylase -
  AMD27_RS00725 (AMD27_00725) - 171107..171610 (+) 504 WP_067655001.1 DUF2946 family protein -
  AMD27_RS00730 (AMD27_00730) - 171668..173806 (+) 2139 WP_067655004.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 48957.31 Da        Isoelectric Point: 6.5698

>NTDB_id=176691 AMD27_RS00710 WP_067654993.1 167851..169170(-) (dprA) [Acinetobacter sp. TGL-Y2]
MLNEISDVHLHHIKLWYLVQHSLSSFQKAMQFFGSAEQATSAAHLVRWSELNIHQNHVQRAQDFLSHDGQLKFEHCLNKI
IQHSDFILLDSDDDYPKQLLPYSDRPPILFGQGSYQNLSQAQVAIVGSRKPSPHGKQVAYDFAYYLSEKGFFITSGLAQG
IDEAAHLGALKNHRTIAVIGTGLDQVYPSQNKALQQNILLHSGTILSEFLPETKPLQHHFPRRNRIVSGLSLGVLVAEAT
LGSGSLITAQAAAHQGKTTFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQYQQQDAAQKNDAEKSPNF
KVSDLKLSDLKNVDQQKIAPNPLIIKTKTRDSDQSTPNSVLDSTYSNPASSPRIDALAEIPPNLYKLYQQLDWVGQDLDH
LAQAMHLDAAELTGALMELELMGLCIQQSGLYLRCRPSH

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=176691 AMD27_RS00710 WP_067654993.1 167851..169170(-) (dprA) [Acinetobacter sp. TGL-Y2]
ATGTTGAATGAGATATCTGATGTACATCTGCACCACATCAAATTGTGGTATCTCGTGCAACACTCGCTTTCTTCATTTCA
AAAAGCCATGCAATTCTTCGGCTCTGCCGAGCAAGCGACCAGTGCTGCACATCTGGTCCGTTGGTCAGAACTGAACATTC
ATCAAAATCATGTGCAACGTGCGCAAGACTTTTTAAGCCATGACGGACAACTCAAGTTCGAACATTGTTTAAATAAAATC
ATTCAGCACAGCGACTTTATTTTGCTCGACAGTGATGATGATTATCCCAAACAACTGTTGCCTTATTCAGATCGTCCACC
GATTTTATTCGGTCAAGGGTCATATCAAAACTTAAGCCAAGCGCAAGTCGCGATTGTGGGCAGTCGTAAACCCAGCCCAC
ACGGTAAACAAGTGGCTTATGACTTTGCTTATTATTTAAGTGAAAAAGGCTTCTTCATTACCAGTGGTTTAGCCCAAGGA
ATTGATGAAGCCGCGCATTTGGGCGCACTCAAGAATCATCGAACCATTGCGGTCATTGGGACAGGTTTAGACCAAGTTTA
TCCTAGCCAAAATAAAGCGTTGCAACAGAATATTTTGCTACATTCGGGCACGATTCTTTCTGAGTTTTTACCCGAAACTA
AACCTTTACAACATCATTTTCCACGGCGTAACCGTATTGTCAGTGGTTTAAGTTTAGGAGTGTTGGTCGCAGAGGCAACA
CTCGGCAGTGGTTCTCTCATTACTGCGCAAGCTGCAGCACATCAAGGTAAAACCACTTTTGCTATACCGGGTCATATTTA
CAGTGAGTTCCATCAAGGTTGTCATCAACTGATTCGTGAAGGTGCAATTTTGGTAGATCATCCTGAGCAAATTATTGAAG
ATTTGGCACTACCCACTCAGTGGCAATATCAACAACAAGATGCAGCGCAAAAAAACGATGCTGAAAAAAGCCCAAACTTT
AAAGTGTCAGATCTGAAGCTATCAGATCTCAAAAACGTGGATCAACAAAAGATCGCGCCTAACCCCCTCATCATCAAAAC
AAAGACACGAGATTCTGATCAAAGTACCCCAAACAGCGTTTTAGATTCGACTTATTCAAATCCTGCAAGTTCACCCCGCA
TTGATGCCTTAGCCGAGATTCCCCCAAATTTATATAAACTTTACCAACAACTGGATTGGGTCGGTCAGGATTTAGATCAT
TTGGCTCAAGCCATGCATTTGGATGCTGCCGAATTGACAGGGGCATTGATGGAATTAGAGCTTATGGGCTTATGTATTCA
ACAATCAGGACTGTACTTGCGTTGCCGTCCGAGCCATTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(387-430)

DNA recombination-mediator protein A (DNA_processg_A)

(88-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A145WKM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

54.817

99.317

0.544
  dprA Acinetobacter baumannii D1279779

54.128

99.317

0.538
  dprA Acinetobacter baylyi ADP1

53.425

99.772

0.533

Multiple sequence alignment