Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SporoS204_RS09300 Genome accession   NZ_CP015108
Coordinates   1879775..1880296 (+) Length   173 a.a.
NCBI ID   WP_029054371.1    Uniprot ID   -
Organism   Sporosarcina ureae strain S204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1874775..1885296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoS204_RS09265 (SporoS204_09200) - 1874836..1875540 (+) 705 WP_029054378.1 DUF554 domain-containing protein -
  SporoS204_RS09270 yyaC 1875451..1876092 (-) 642 WP_029054377.1 spore protease YyaC -
  SporoS204_RS09275 (SporoS204_09205) - 1876206..1877144 (+) 939 WP_051210565.1 mechanosensitive ion channel family protein -
  SporoS204_RS09280 (SporoS204_09210) - 1877125..1877322 (+) 198 WP_029054375.1 DUF951 domain-containing protein -
  SporoS204_RS09285 (SporoS204_09215) ychF 1877417..1878517 (+) 1101 WP_029054374.1 redox-regulated ATPase YchF -
  SporoS204_RS09290 (SporoS204_09220) - 1878741..1879283 (-) 543 WP_029054373.1 DUF3267 domain-containing protein -
  SporoS204_RS09295 (SporoS204_09225) rpsF 1879439..1879726 (+) 288 WP_029054372.1 30S ribosomal protein S6 -
  SporoS204_RS09300 (SporoS204_09230) ssbA 1879775..1880296 (+) 522 WP_029054371.1 single-stranded DNA-binding protein Machinery gene
  SporoS204_RS09305 (SporoS204_09235) rpsR 1880342..1880578 (+) 237 WP_029054370.1 30S ribosomal protein S18 -
  SporoS204_RS09310 (SporoS204_09240) - 1880831..1881769 (+) 939 WP_029054369.1 DUF2232 domain-containing protein -
  SporoS204_RS09315 (SporoS204_09245) - 1881781..1883757 (+) 1977 WP_029054368.1 DHH family phosphoesterase -
  SporoS204_RS09320 (SporoS204_09250) rplI 1883754..1884200 (+) 447 WP_029054367.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19080.94 Da        Isoelectric Point: 4.9431

>NTDB_id=176636 SporoS204_RS09300 WP_029054371.1 1879775..1880296(+) (ssbA) [Sporosarcina ureae strain S204]
MINRVVLVGRLTKDPELKYTQTGIAVTRFTLAVNRAFANAQGEREADFITCVAWRKQAENIANYLRKGSLAGVDGRIQTG
SFEGQDGKRVYTTEVVADSTQFLEPRNANTERQQTPSYGGGAPSYNAPSQNQGQGYNNQQSYQPNQQNMTRVDNDPFQPG
GGPIEVTDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=176636 SporoS204_RS09300 WP_029054371.1 1879775..1880296(+) (ssbA) [Sporosarcina ureae strain S204]
ATGATAAACCGTGTCGTTTTAGTTGGCCGATTAACAAAAGATCCTGAGCTGAAATATACACAAACTGGAATTGCAGTAAC
ACGTTTTACACTGGCAGTGAACCGTGCGTTCGCTAATGCCCAGGGAGAACGGGAAGCGGATTTCATCACGTGTGTAGCTT
GGCGTAAACAGGCTGAGAATATCGCGAATTATTTACGAAAAGGAAGTCTAGCCGGAGTGGATGGTCGTATACAGACGGGC
AGCTTCGAAGGCCAAGACGGTAAGCGTGTTTACACGACAGAAGTTGTTGCGGATAGTACTCAATTCCTGGAACCAAGAAA
TGCTAATACAGAACGTCAGCAAACACCATCTTATGGTGGTGGAGCGCCTTCTTATAATGCACCTTCTCAAAACCAGGGAC
AAGGATACAATAACCAGCAATCCTACCAACCGAATCAGCAAAATATGACACGTGTCGATAATGATCCATTCCAGCCAGGC
GGCGGTCCGATTGAAGTAACAGATGACGACTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.561
  ssb Latilactobacillus sakei subsp. sakei 23K

51.705

100

0.526
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.272

0.37

Multiple sequence alignment