Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS16805 Genome accession   NZ_CP018870
Coordinates   3718325..3718984 (+) Length   219 a.a.
NCBI ID   WP_030027640.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3713325..3723984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS16785 (BSL84_16785) - 3713682..3714872 (+) 1191 WP_075970652.1 acyltransferase family protein -
  BSL84_RS16790 (BSL84_16790) - 3714883..3716232 (+) 1350 WP_234308292.1 sensor histidine kinase -
  BSL84_RS16795 (BSL84_16795) vraR 3716229..3716900 (+) 672 WP_030027637.1 response regulator Regulator
  BSL84_RS16800 (BSL84_16800) - 3716988..3718328 (+) 1341 WP_075970653.1 sensor histidine kinase -
  BSL84_RS16805 (BSL84_16805) vraR 3718325..3718984 (+) 660 WP_030027640.1 response regulator Regulator
  BSL84_RS16810 (BSL84_16810) - 3719013..3720224 (+) 1212 WP_030027641.1 cytochrome P450 -
  BSL84_RS16815 (BSL84_16815) - 3720253..3721095 (-) 843 WP_030027642.1 hypothetical protein -
  BSL84_RS16820 (BSL84_16820) - 3721279..3722562 (+) 1284 WP_030027643.1 adenylosuccinate synthase -
  BSL84_RS16825 (BSL84_16825) - 3722724..3723650 (+) 927 WP_079273219.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23558.39 Da        Isoelectric Point: 4.6426

>NTDB_id=176533 BSL84_RS16805 WP_030027640.1 3718325..3718984(+) (vraR) [Streptomyces sp. TN58]
MTIKVLIVDDQMMVREGFSVLLNAMDGIEVVGEAVDGREAIAQVAALRPDVVLMDIRMPQMNGLEATREIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLIAEFSKISEARKLADPAGVGELTERE
TEVLILIAQGLSNVEIAGRLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=176533 BSL84_RS16805 WP_030027640.1 3718325..3718984(+) (vraR) [Streptomyces sp. TN58]
ATGACGATCAAGGTGCTGATCGTCGACGACCAGATGATGGTCCGTGAGGGGTTCTCCGTACTGCTGAACGCCATGGACGG
CATCGAGGTGGTGGGCGAGGCGGTCGACGGCCGGGAGGCCATCGCCCAGGTGGCGGCGCTGCGGCCGGACGTGGTGCTGA
TGGACATCCGGATGCCGCAGATGAACGGCCTGGAGGCGACGCGGGAGATCGTGGCCGCGGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGGGCGGGTGCTTCCGGATTCCTGTTGAAGGACGC
TTCGGCCCGTCAACTGGCGGACGGGGTGAGGGTGGTGGCTGCCGGTGAGGCGCTGCTGGCGCCTTCGGTGACGAAGCGTC
TGATCGCGGAGTTCTCGAAGATCTCAGAGGCGCGCAAGCTGGCGGATCCGGCGGGGGTGGGTGAGCTGACGGAGCGGGAG
ACGGAGGTGCTGATCCTGATCGCGCAGGGGTTGTCCAACGTGGAGATAGCCGGCCGGCTGATCGTGGCGGAGTCGACCAT
CAAGACCCATGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGGACGCAGGCGGCGGTGTTCGCCTATGAGACCC
GGCTGGTGACACCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.833

98.63

0.452
  degU Bacillus subtilis subsp. subtilis str. 168

40.807

100

0.416