Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS16795 Genome accession   NZ_CP018870
Coordinates   3716229..3716900 (+) Length   223 a.a.
NCBI ID   WP_030027637.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3711229..3721900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS16780 (BSL84_16780) - 3712733..3713689 (+) 957 WP_075970651.1 alpha/beta hydrolase -
  BSL84_RS16785 (BSL84_16785) - 3713682..3714872 (+) 1191 WP_075970652.1 acyltransferase family protein -
  BSL84_RS16790 (BSL84_16790) - 3714883..3716232 (+) 1350 WP_234308292.1 sensor histidine kinase -
  BSL84_RS16795 (BSL84_16795) vraR 3716229..3716900 (+) 672 WP_030027637.1 response regulator Regulator
  BSL84_RS16800 (BSL84_16800) - 3716988..3718328 (+) 1341 WP_075970653.1 sensor histidine kinase -
  BSL84_RS16805 (BSL84_16805) vraR 3718325..3718984 (+) 660 WP_030027640.1 response regulator Regulator
  BSL84_RS16810 (BSL84_16810) - 3719013..3720224 (+) 1212 WP_030027641.1 cytochrome P450 -
  BSL84_RS16815 (BSL84_16815) - 3720253..3721095 (-) 843 WP_030027642.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23822.63 Da        Isoelectric Point: 4.6965

>NTDB_id=176532 BSL84_RS16795 WP_030027637.1 3716229..3716900(+) (vraR) [Streptomyces sp. TN58]
MRTPIKVMIADDQMMVRQGFTVLLDAQPDIEVVGQAVDGADAVAKVAELAPDVVLMDIRMPGMGGIEATSVITRVPGAAV
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSVARIDVLTE
RETEVLSLIAQGLSNAEISEHLVLAEQTVKTHVSRILVKLGLRDRTQAAVFAYESGLIRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=176532 BSL84_RS16795 WP_030027637.1 3716229..3716900(+) (vraR) [Streptomyces sp. TN58]
ATGAGGACCCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTGCGGCAGGGCTTCACCGTGCTTCTCGACGCCCA
GCCCGACATAGAGGTCGTGGGGCAGGCCGTGGACGGGGCGGACGCCGTCGCGAAGGTCGCCGAGCTGGCCCCGGACGTGG
TGCTGATGGACATCCGCATGCCCGGCATGGGCGGCATCGAGGCCACGTCCGTGATCACCCGCGTTCCCGGCGCCGCGGTG
AAGGTGCTCGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGGGCCGGTGCCTCCGGCTTCCTGCT
GAAGGACGCCTCGGCCGATCAGCTCGCGGAAGCGGTGCGGGTGGTGGCGGCCGGCGAGGCGCTGCTCTCGCCGAACATCA
CGAAGCGGCTGATCACGGAGTTCTCCCGGCTCGGGGCGCCGCGCGCGCCGTCCGTGGCCCGGATCGACGTGCTGACCGAG
CGGGAGACCGAGGTGCTGTCGCTGATCGCCCAGGGCCTGTCGAACGCTGAGATCTCCGAGCATCTGGTCCTGGCCGAGCA
GACGGTGAAGACGCATGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGCACGCAGGCCGCGGTGTTCGCGTACG
AGAGCGGTCTGATCCGTCCGGCGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-212)

Response regulator receiver domain (Response_reg)

(7-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

96.861

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

42.478

100

0.43