Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SporoP33_RS09220 Genome accession   NZ_CP015027
Coordinates   1839636..1840154 (-) Length   172 a.a.
NCBI ID   WP_081243440.1    Uniprot ID   -
Organism   Sporosarcina sp. P33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1834636..1845154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP33_RS09200 (SporoP33_09130) rplI 1835732..1836178 (-) 447 WP_081243436.1 50S ribosomal protein L9 -
  SporoP33_RS09205 (SporoP33_09135) - 1836175..1838157 (-) 1983 WP_081243437.1 DHH family phosphoesterase -
  SporoP33_RS09210 (SporoP33_09140) - 1838169..1839107 (-) 939 WP_081243438.1 YybS family protein -
  SporoP33_RS09215 (SporoP33_09145) rpsR 1839353..1839592 (-) 240 WP_196796916.1 30S ribosomal protein S18 -
  SporoP33_RS09220 (SporoP33_09150) ssbA 1839636..1840154 (-) 519 WP_081243440.1 single-stranded DNA-binding protein Machinery gene
  SporoP33_RS09225 (SporoP33_09155) rpsF 1840202..1840489 (-) 288 WP_081243441.1 30S ribosomal protein S6 -
  SporoP33_RS09230 (SporoP33_09160) - 1840645..1841187 (+) 543 WP_081243442.1 DUF3267 domain-containing protein -
  SporoP33_RS09235 (SporoP33_09165) ychF 1841350..1842450 (-) 1101 WP_081243443.1 redox-regulated ATPase YchF -
  SporoP33_RS09240 (SporoP33_09170) - 1842545..1842742 (-) 198 WP_081244818.1 DUF951 domain-containing protein -
  SporoP33_RS09245 (SporoP33_09175) - 1842723..1843655 (-) 933 WP_081243444.1 mechanosensitive ion channel family protein -
  SporoP33_RS09250 (SporoP33_09180) yyaC 1843767..1844408 (+) 642 WP_081243445.1 spore protease YyaC -
  SporoP33_RS09255 (SporoP33_09185) - 1844319..1845023 (-) 705 WP_081243446.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19037.87 Da        Isoelectric Point: 4.7621

>NTDB_id=176252 SporoP33_RS09220 WP_081243440.1 1839636..1840154(-) (ssbA) [Sporosarcina sp. P33]
MINRVVLVGRLTKDPELKYTQTGIAVTRFTLAVNRAFANQQGEREADFINCVAWRKQAENIANYLRKGSLAGVDGRIQTG
SFEGQDGKRVYTTEVVADSTQFLEPRSANTERQQTPSYGGGAPSYNAPQDQGQGYNNQQSYQPNQQNMTRVDNDPFQPGG
GPIEVTDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=176252 SporoP33_RS09220 WP_081243440.1 1839636..1840154(-) (ssbA) [Sporosarcina sp. P33]
ATGATAAACCGTGTCGTTTTAGTTGGCCGATTAACAAAAGATCCTGAGCTGAAATATACACAGACCGGAATTGCTGTGAC
TCGTTTCACGCTGGCTGTGAACCGCGCGTTCGCTAACCAGCAGGGAGAGCGGGAAGCTGATTTCATCAACTGTGTAGCTT
GGCGTAAACAGGCTGAAAATATCGCGAATTATTTACGAAAAGGAAGTCTAGCCGGAGTAGATGGCCGTATTCAGACGGGC
AGCTTTGAAGGCCAGGACGGTAAGCGTGTTTACACGACAGAAGTTGTTGCGGACAGTACCCAATTCCTGGAGCCGCGCAG
TGCCAATACAGAACGTCAGCAGACGCCATCATACGGTGGCGGAGCTCCTTCTTATAATGCACCGCAAGATCAGGGACAAG
GGTACAACAACCAGCAATCCTACCAACCGAATCAGCAAAATATGACGCGTGTCGATAATGATCCATTCCAGCCGGGCGGC
GGTCCAATCGAAGTAACTGATGATGACTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.386

100

0.587
  ssb Latilactobacillus sakei subsp. sakei 23K

51.705

100

0.529
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.628

0.372

Multiple sequence alignment