Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   BTR42_RS10345 Genome accession   NZ_CP018822
Coordinates   2081337..2083352 (-) Length   671 a.a.
NCBI ID   WP_077497609.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2076337..2088352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS10310 (BTR42_10040) - 2076344..2076796 (+) 453 WP_009854870.1 universal stress protein -
  BTR42_RS10315 (BTR42_10045) - 2076873..2078276 (-) 1404 WP_012962446.1 HAD-IIB family hydrolase -
  BTR42_RS10320 (BTR42_10050) - 2078347..2079309 (+) 963 WP_013643397.1 asparaginase -
  BTR42_RS10325 (BTR42_10055) - 2079374..2079577 (-) 204 WP_012962447.1 helix-turn-helix domain-containing protein -
  BTR42_RS10330 (BTR42_10060) - 2079588..2079833 (-) 246 WP_061460037.1 hypothetical protein -
  BTR42_RS10335 (BTR42_10065) - 2079847..2080347 (-) 501 WP_077497603.1 DUF2975 domain-containing protein -
  BTR42_RS10340 (BTR42_10070) - 2080375..2080845 (-) 471 WP_077497606.1 hypothetical protein -
  BTR42_RS10345 (BTR42_10075) recG/mmsA 2081337..2083352 (-) 2016 WP_077497609.1 ATP-dependent DNA helicase RecG Machinery gene
  BTR42_RS10350 (BTR42_10080) alr 2083439..2084545 (-) 1107 WP_077497611.1 alanine racemase -
  BTR42_RS10355 (BTR42_10085) acpS 2084602..2084961 (-) 360 WP_009854878.1 holo-ACP synthase -
  BTR42_RS10360 (BTR42_10090) - 2085082..2086137 (-) 1056 WP_009854879.1 3-deoxy-7-phosphoheptulonate synthase -
  BTR42_RS10365 (BTR42_10095) - 2086141..2087172 (-) 1032 WP_009854880.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74668.77 Da        Isoelectric Point: 6.2243

>NTDB_id=176231 BTR42_RS10345 WP_077497609.1 2081337..2083352(-) (recG/mmsA) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MNLQSSIVELKGIGAKSAEKFYKLDIYTIEDLLLYYPFRYEDFKSKRVSELADGEKAVITGTVVTPANVQYYGYKRNRLS
FKIKQGEAVIAISFFNQPYLADKVELGSDIAIFGKWDALKSAVTGMKILAQVEDDMQPVYRVAQGISQNALVKAIKSAFE
IGAQNWLPENLPQLLLDKYRLLGRAQATAAMHFPKDLAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQ
KVADKIAALPFTLTGGQRRSLDDILVDMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQHFES
LTQLFPALSIAILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRLGLVITDEQHRFGVNQRRVFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKN
AVALHEELSAYFADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAILVANPKTQTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR
VASQIVSEKDWQNNPQWQIVSQNLKDKGTFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=176231 BTR42_RS10345 WP_077497609.1 2081337..2083352(-) (recG/mmsA) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGAATTTACAATCATCAATTGTGGAATTAAAAGGAATAGGGGCTAAGTCGGCGGAAAAATTTTATAAGTTAGATATTTA
TACCATTGAAGATTTACTGCTGTACTATCCTTTTCGATATGAAGATTTTAAGAGCAAGCGTGTTTCAGAGCTTGCTGATG
GAGAAAAAGCTGTCATTACGGGAACGGTTGTGACACCTGCAAATGTGCAATATTATGGTTATAAGCGTAATCGTCTGTCG
TTTAAAATCAAGCAGGGCGAAGCGGTTATTGCGATTTCTTTTTTTAACCAGCCTTATTTAGCTGATAAAGTCGAGCTTGG
CAGCGATATCGCGATTTTTGGAAAATGGGATGCCCTGAAATCAGCGGTGACTGGTATGAAAATTTTAGCGCAAGTTGAAG
ATGATATGCAGCCAGTTTACCGTGTTGCTCAAGGTATTTCACAAAATGCACTGGTCAAAGCTATCAAATCAGCTTTTGAA
ATTGGTGCTCAGAATTGGTTGCCTGAAAATTTACCGCAGCTACTTTTGGACAAGTATCGTTTGTTAGGGCGTGCTCAAGC
AACGGCTGCTATGCACTTTCCGAAAGATTTAGCAGAGTATAAACAAGCACTTCGTCGGATAAAATTTGAAGAACTGTTCT
ATTTCCAAATGAATTTGCAAGCTTTAAAGGCAGACAATAAATCAGAAGCTAATGGTTTGGCGATTGCTTATGATGAGCAA
AAAGTTGCTGATAAGATTGCAGCTCTGCCATTTACCTTAACGGGTGGTCAAAGGCGGAGTCTTGATGATATTTTGGTGGA
TATGCGTTCTGGTGGTCATATGAATCGTCTCTTGCAAGGAGATGTCGGATCTGGTAAGACGGTTGTGGCTAGTCTTGCCA
TGTATGCTACTTATACGGCAGGTTTTCAATCAGCTTTGATGGTGCCAACGGAAATTTTGGCGGAGCAGCATTTTGAAAGT
TTGACCCAGCTTTTTCCAGCTTTGTCCATTGCAATTTTAACATCAGGGATGAAAACAGCAGCCAAACAAGCGGCACTTTC
GGCGATTGCGGATGGTTCGGTAGATATGATTGTTGGTACGCATGCGCTGATTCAAGATGCGGTAACTTACCACCGCTTGG
GGCTTGTCATTACTGATGAACAACACCGTTTTGGTGTCAATCAACGTCGTGTTTTCCGTGAAAAGGGCGAAAATCCAGAT
GTGCTCATGATGACCGCGACACCAATTCCACGGACACTTGCTATTACGGCATTTGGTGAAATGGACGTTTCGATTATTGA
TGAATTGCCTGCAGGACGCAAACCGATTATCACGCGTTGGGTTAAACATGAACAGTTGGAAGTTGTGCTTGATTGGGTCA
AAAAAGAATTGCAAAAAGGGGCACAAGCCTATGTGATTTCACCTTTAATTGAAGAATCTGAATCACTTGATTTGAAAAAT
GCTGTTGCCTTGCACGAGGAATTGTCAGCCTATTTTGCGGATAGTGCAACCGTAGCGCTCATGCATGGTCGCATGAAAAA
TGACGAAAAAGAAGCTATCATGCAAGATTTCAAGGCACAAAAAAGTCAGGTTTTGGTATCGACAACTGTCATTGAAGTTG
GTGTTAATGTCCCAAATGCGACCATTATGATTATTATGGATGCTGACCGATTTGGGCTTAGCCAGTTGCATCAGCTTCGT
GGACGAGTTGGGCGTGGAGATAAACAATCTTATGCTATTTTAGTTGCCAATCCCAAAACACAAACAGGAAAAGAGCGCAT
GAAAATCATGACAGAAACAACGGATGGTTTTGTTTTAGCAGAAGCCGACCTTAAGATGCGTGGTTCAGGTGAGATTTTCG
GCACACGCCAATCAGGAATTCCAGAATTCCAAGTGGCAGATATTGTCGAAGATTACAATATTCTCGAGGAAGCTAGACGC
GTTGCAAGTCAGATTGTTTCCGAAAAAGATTGGCAAAACAATCCACAATGGCAAATTGTTAGCCAAAATCTCAAAGACAA
AGGAACTTTTGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(257-409)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

RecG wedge domain (RecG_wedge)

(10-157)

Helicase conserved C-terminal domain (Helicase_C)

(450-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.641

100

0.706
  recG/mmsA Streptococcus pneumoniae R36A

70.641

100

0.706
  recG Bacillus subtilis subsp. subtilis str. 168

49.331

100

0.495
  recG Neisseria meningitidis strain C311

39.098

99.106

0.387