Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BTR42_RS07540 Genome accession   NZ_CP018822
Coordinates   1495726..1497696 (-) Length   656 a.a.
NCBI ID   WP_077497050.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490726..1502696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS07520 (BTR42_07220) - 1491235..1492161 (-) 927 WP_077497046.1 ATP-binding cassette domain-containing protein -
  BTR42_RS07525 (BTR42_07225) amiE 1492172..1493224 (-) 1053 WP_074657565.1 ABC transporter ATP-binding protein Regulator
  BTR42_RS07530 (BTR42_07230) amiD 1493233..1494159 (-) 927 WP_061459706.1 oligopeptide ABC transporter permease OppC Regulator
  BTR42_RS07535 (BTR42_07235) amiC 1494156..1495658 (-) 1503 WP_077497048.1 ABC transporter permease Regulator
  BTR42_RS07540 (BTR42_07240) amiA 1495726..1497696 (-) 1971 WP_077497050.1 peptide ABC transporter substrate-binding protein Regulator
  BTR42_RS07545 (BTR42_07245) - 1498289..1498624 (-) 336 WP_009854479.1 metal-sulfur cluster assembly factor -
  BTR42_RS07550 (BTR42_07250) rpoD 1498646..1499755 (-) 1110 WP_009854480.1 RNA polymerase sigma factor RpoD -
  BTR42_RS07555 (BTR42_07255) dnaG 1499764..1501572 (-) 1809 WP_331852238.1 DNA primase -
  BTR42_RS07560 (BTR42_07260) mscL 1501893..1502270 (+) 378 WP_009854482.1 large conductance mechanosensitive channel protein MscL -
  BTR42_RS07565 (BTR42_07265) rpsU 1502332..1502508 (-) 177 WP_000048058.1 30S ribosomal protein S21 -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72691.95 Da        Isoelectric Point: 4.4527

>NTDB_id=176218 BTR42_RS07540 WP_077497050.1 1495726..1497696(-) (amiA) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MKKGYLVAAGVTLVSLAALQGCSNSSSAKTESKTYSYVYTADPNTLDYTVSGRATTSNITTEGIDGLLENDKYGNLIPSL
AKDWKVSADGLTYTYTLRKGIKWYTSDGEEYAEVTADDFVTGLKHAADKKSDALYIVQDSIKGLNDYVEGTTKDFSEVGI
KAVDKYTVQYTLNQPESYWNSKTTYGILQPVNADFLKSKGDDFGSVDPSSILYNGPFIVKSITSKSSIEFEKNENYWDAD
KVKLDAVKLTYSDGSDPESLYKNFDKGNYSEARLYPTKSSYKAIEKKYKDEIYYAPQDQTTYYVSFNLNRKAYEFTSKEN
DTQKTDTHKAILNKDFRQAITFAFDRTAYNSQSVGKEAASKSLRNLFVPPTFISTNGTEFGELVKEDLAGDSTWSDVDFS
DAQDGLYNVDKAKTSFEKAKAALEAEGVQFPIHIDIAADQTSDVAVQRVSSLKQSVEASLGTDNIIIDIQKESEDDYYRT
GYYAESADQKDYDISDGSGWSPDYDDPSTYLDIFNSESGATSDNIGVDTNDADAKAEAEKAVGLDTYTELTKAAAAITDD
LDARYKAYAKAQAWLTDNAIIIPTISLGATPKLSKVVPFTASYSVSGSKGGTYKYVEIQDEPVTTKQYEKALKKWEKAKE
KSNKEYQEKLSEHIED

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=176218 BTR42_RS07540 WP_077497050.1 1495726..1497696(-) (amiA) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGAAAAAGGGTTATTTAGTAGCAGCAGGTGTCACTCTTGTGTCGTTGGCGGCTTTGCAAGGGTGTTCAAATTCAAGTTC
TGCTAAAACAGAAAGCAAGACATATTCTTACGTATATACTGCGGATCCTAATACGCTTGATTATACTGTATCTGGTCGTG
CTACAACATCTAATATAACTACCGAAGGTATAGATGGTTTACTAGAGAATGATAAATATGGTAATTTGATTCCTTCTCTT
GCTAAAGATTGGAAAGTTTCAGCGGACGGGTTGACATATACCTATACACTCCGCAAAGGTATTAAGTGGTACACCTCTGA
TGGTGAAGAATATGCCGAAGTGACAGCAGATGATTTTGTAACAGGTCTAAAACACGCAGCTGATAAGAAGTCTGATGCTT
TGTATATCGTTCAAGATTCGATTAAAGGCTTGAATGATTATGTTGAAGGAACGACAAAGGATTTCTCAGAAGTCGGTATC
AAAGCAGTTGATAAATACACTGTTCAATACACTTTAAACCAACCAGAAAGTTATTGGAATTCAAAAACAACCTACGGTAT
TTTGCAACCTGTTAATGCAGACTTTTTGAAATCAAAAGGCGATGACTTTGGTTCTGTGGATCCATCAAGTATTCTTTACA
ATGGACCATTTATCGTAAAATCAATCACTTCTAAATCTTCCATAGAGTTTGAAAAGAATGAAAATTATTGGGATGCAGAT
AAAGTAAAACTTGATGCGGTGAAATTAACTTATAGTGACGGTTCTGATCCAGAATCACTCTATAAAAACTTTGATAAAGG
TAACTATAGTGAAGCACGTCTTTATCCAACGAAGTCAAGTTATAAAGCTATTGAGAAAAAATATAAAGACGAAATTTATT
ATGCACCACAAGATCAGACGACTTATTATGTATCCTTTAACTTGAATCGTAAAGCTTACGAATTTACTTCAAAAGAAAAT
GATACTCAAAAAACGGACACACATAAAGCAATTTTAAATAAAGATTTCCGTCAAGCCATTACCTTTGCTTTTGATAGAAC
AGCTTATAATTCGCAAAGTGTAGGTAAGGAAGCAGCATCGAAATCACTTCGTAATTTATTTGTACCGCCAACATTTATTT
CTACTAACGGAACGGAGTTTGGAGAACTTGTTAAAGAAGATTTGGCGGGTGATTCAACTTGGAGCGATGTTGATTTTTCA
GATGCTCAAGATGGGCTTTATAATGTTGATAAAGCAAAAACTTCATTTGAAAAAGCAAAAGCTGCTCTTGAAGCAGAGGG
AGTGCAGTTCCCAATTCATATAGATATTGCGGCTGATCAGACTTCTGATGTTGCAGTCCAACGAGTAAGCTCTTTGAAAC
AATCTGTTGAAGCTTCGCTTGGGACAGATAATATTATAATTGATATTCAAAAAGAAAGTGAAGATGATTATTATCGTACA
GGTTACTACGCTGAATCCGCAGATCAAAAAGATTATGATATTTCAGATGGTTCAGGTTGGTCTCCGGATTATGACGACCC
TTCAACTTATTTAGATATTTTCAATTCAGAATCTGGTGCCACATCTGATAATATTGGAGTTGATACCAACGATGCGGATG
CTAAGGCTGAAGCTGAAAAGGCAGTAGGGCTTGATACTTATACAGAGTTAACAAAGGCTGCTGCTGCTATTACAGATGAT
TTGGATGCACGCTATAAAGCTTATGCGAAAGCACAAGCTTGGCTAACGGATAATGCTATTATTATTCCAACGATTAGTTT
AGGAGCAACACCAAAACTTTCAAAAGTCGTACCATTTACAGCATCTTATTCAGTATCTGGTAGTAAAGGGGGAACGTATA
AATACGTTGAAATTCAAGATGAGCCTGTAACTACTAAGCAATATGAAAAAGCATTGAAGAAATGGGAAAAAGCTAAGGAA
AAATCAAACAAAGAATATCAGGAAAAACTTTCAGAGCATATTGAAGACTAG

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.985

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

53.544

100

0.541
  amiA3 Streptococcus thermophilus LMD-9

53.243

100

0.538