Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   BTR42_RS00655 Genome accession   NZ_CP018822
Coordinates   97846..98139 (+) Length   97 a.a.
NCBI ID   WP_012961329.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92846..103139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS00630 (BTR42_00395) - 94837..95205 (+) 369 WP_074658936.1 DUF1033 family protein -
  BTR42_RS00635 (BTR42_00400) comGA 95276..96217 (+) 942 WP_077495921.1 competence type IV pilus ATPase ComGA Machinery gene
  BTR42_RS00640 (BTR42_00405) comGB 96099..97184 (+) 1086 WP_231873059.1 competence type IV pilus assembly protein ComGB Machinery gene
  BTR42_RS00645 (BTR42_00410) comGC 97184..97477 (+) 294 WP_039695588.1 competence type IV pilus major pilin ComGC Machinery gene
  BTR42_RS00650 (BTR42_00415) comGD 97461..97892 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  BTR42_RS00655 (BTR42_00420) comGE 97846..98139 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE Machinery gene
  BTR42_RS00660 (BTR42_00425) comGF 98093..98560 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  BTR42_RS00665 (BTR42_00430) comGG 98514..98864 (+) 351 WP_420031090.1 competence type IV pilus minor pilin ComGG Machinery gene
  BTR42_RS00670 (BTR42_00435) comGH 98919..99875 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  BTR42_RS00675 (BTR42_00440) - 99928..101127 (+) 1200 WP_061458770.1 acetate kinase -
  BTR42_RS00680 (BTR42_00445) - 101289..101489 (+) 201 WP_012961332.1 helix-turn-helix transcriptional regulator -
  BTR42_RS00690 (BTR42_00455) - 101721..102173 (+) 453 WP_061458772.1 hypothetical protein -
  BTR42_RS00695 (BTR42_00460) - 102185..102820 (+) 636 WP_077495927.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10952.89 Da        Isoelectric Point: 8.4757

>NTDB_id=176152 BTR42_RS00655 WP_012961329.1 97846..98139(+) (comGE) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MVNIKRQKLKAYILLESLIALGLLAMITSIVLGEIDKNRQSMQESLRQQEALNVATMAVQTGQNHLKMNGVEVEIIKKDG
EVYVYEGKTEILHVKKD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=176152 BTR42_RS00655 WP_012961329.1 97846..98139(+) (comGE) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
GTGGTAAATATAAAAAGACAGAAACTAAAAGCTTACATACTCCTTGAAAGCTTGATAGCACTAGGATTGTTAGCGATGAT
TACGAGTATTGTTTTAGGGGAAATTGATAAAAATAGGCAGTCTATGCAAGAAAGTTTACGGCAGCAGGAAGCTCTTAATG
TGGCAACAATGGCTGTGCAAACAGGACAAAATCATTTGAAGATGAATGGTGTTGAGGTTGAGATTATCAAAAAAGATGGA
GAGGTCTATGTTTATGAGGGGAAAACGGAAATATTACACGTTAAAAAAGACTAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

47.917

98.969

0.474
  comGE Streptococcus mutans UA159

47.917

98.969

0.474
  comGE/cglE Streptococcus mitis SK321

42.553

96.907

0.412
  comGE/cglE Streptococcus pneumoniae Rx1

41.489

96.907

0.402
  comGE/cglE Streptococcus pneumoniae D39

41.489

96.907

0.402
  comGE/cglE Streptococcus pneumoniae R6

41.489

96.907

0.402
  comGE/cglE Streptococcus pneumoniae TIGR4

41.489

96.907

0.402
  comGE/cglE Streptococcus mitis NCTC 12261

41.489

96.907

0.402