Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BTV19_RS08460 Genome accession   NZ_CP018803
Coordinates   1852003..1854084 (-) Length   693 a.a.
NCBI ID   WP_075294181.1    Uniprot ID   A0A9Q6Z000
Organism   Histophilus somni strain USDA-ARS-USMARC-63255     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847003..1859084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV19_RS08455 (BTV19_08445) murI 1851130..1851933 (-) 804 WP_075294180.1 glutamate racemase -
  BTV19_RS08460 (BTV19_08450) recG 1852003..1854084 (-) 2082 WP_075294181.1 ATP-dependent DNA helicase RecG Machinery gene
  BTV19_RS08465 (BTV19_08455) spoT 1854084..1856207 (-) 2124 WP_075294182.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  BTV19_RS08470 (BTV19_08460) rpoZ 1856288..1856560 (-) 273 WP_011609609.1 DNA-directed RNA polymerase subunit omega -
  BTV19_RS08475 (BTV19_08465) gmk 1856615..1857241 (-) 627 WP_075294183.1 guanylate kinase -
  BTV19_RS08480 (BTV19_08470) - 1857350..1858150 (-) 801 WP_075294184.1 LicD family protein -
  BTV19_RS08485 (BTV19_08475) - 1858152..1858850 (-) 699 WP_075294185.1 NTP transferase domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77700.38 Da        Isoelectric Point: 9.1192

>NTDB_id=175855 BTV19_RS08460 WP_075294181.1 1852003..1854084(-) (recG) [Histophilus somni strain USDA-ARS-USMARC-63255]
MGGQFLDAIPLTSLSGVGAAIAEKLGRIGLFSLQDLLFHLPIRYEDRTRITPIIDLRIDQHATIEGIVQTCDIQLGRRPV
LVVTLSDGTAKIALRFFNFNAGMKNGFQLGARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQ
NTLRKLTEQALVLLEKMPLAELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLGQGKHPAQLRLIFEELLAHNLAMQKVR
CGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRSFPMMRLVQGDVGSGKTLVVALAALTAIDNGKQV
ALMAPTEILAEQHTANFQRWFEPLGIRVGCLTGKVKGKSRQATLEEISQGNIQMVVGTHALFQDDVKFAELVLVVIDEQH
RFGVHQRLMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDTSIIDELPPGRTPIQTIAVSEERRTEIVARVYNACV
NEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRMKVSEKQEVMRQFKNAELNLLVATTVIEVGVDVP
NASLMIIENAERLGLAQLHQLRGRVGRGSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQ
TGVAEFKVADLIRDRKMLPTVQHYARLLITRSPKLADDLIQRWLKHKEIYTNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=175855 BTV19_RS08460 WP_075294181.1 1852003..1854084(-) (recG) [Histophilus somni strain USDA-ARS-USMARC-63255]
ATGGGTGGACAATTCTTAGACGCTATTCCACTTACTTCTTTGTCGGGTGTCGGTGCCGCAATAGCAGAAAAATTAGGTAG
AATTGGGCTTTTTAGCCTGCAAGATCTTCTGTTTCATTTGCCTATTCGTTATGAAGATCGTACCCGTATTACCCCTATTA
TTGATCTTCGTATTGATCAACATGCGACAATTGAAGGAATAGTACAAACTTGTGATATTCAATTGGGTCGTCGTCCAGTT
CTTGTGGTGACGCTTTCTGACGGTACTGCCAAAATTGCCTTACGCTTTTTTAATTTTAATGCAGGTATGAAAAATGGCTT
TCAGCTTGGAGCGAGGGTGAAAGCCTTTGGGGAAATTAAGCGAGGTCGATTTATGGCTGAAATTCATCACCCTGAGTATG
AAATTATTCGTGATAATAGACCTCTTCAGTTAGCAGAAACGCTCACCCCAATTTATGCGACAACGGAAGGCTTGAAGCAA
AATACATTACGAAAGTTGACTGAGCAGGCATTAGTGTTGCTAGAAAAAATGCCATTAGCGGAATTATTGCCTAGAGCTTT
TAATCCTCATGATTTTAGTTTAAAACAGGCTATTTACGTTTTACATCGCCCACCACCAGATATTTCTTTGGAATTGTTGG
GGCAAGGAAAACACCCTGCACAGTTACGTTTAATTTTTGAAGAATTATTAGCACATAATCTTGCTATGCAAAAAGTGCGG
TGCGGATCTCAACATTTTTCAGCTTTACCCTTACGTTATCAAACAGCATTGAAGCAAAATTTTCTTGATTTATTGCCATA
TCAACCGACAAATGCACAACAAAGAGTTGTTGCTGAAATTGAATATGATCTGGGACGTTCTTTCCCAATGATGCGTTTGG
TACAAGGCGATGTTGGCTCCGGTAAAACTTTAGTTGTTGCCTTAGCTGCATTAACTGCTATTGATAACGGTAAACAGGTA
GCACTCATGGCACCGACTGAAATTTTGGCAGAGCAACATACTGCAAATTTCCAACGTTGGTTTGAACCGTTAGGAATAAG
AGTGGGTTGTTTGACAGGAAAAGTAAAAGGCAAATCTCGTCAAGCCACATTGGAGGAGATATCCCAAGGCAATATACAAA
TGGTTGTTGGTACTCATGCCTTGTTTCAAGATGATGTCAAGTTTGCCGAACTGGTATTAGTTGTTATTGATGAACAACAT
CGCTTTGGTGTACATCAACGCCTGATGTTGCGTGAAAAAGGAAAGTATGCCGGTATTTATCCACATCAATTAATTATGAC
TGCAACACCTATTCCTCGTACATTGGCAATGGTAGCCTATGCAGATTTAGATACTTCAATTATTGATGAGTTACCTCCGG
GAAGAACACCAATTCAAACTATTGCGGTATCTGAAGAACGCAGAACCGAAATCGTCGCTAGGGTGTATAATGCTTGTGTT
AATGAAAAACGCCAAGCGTATTGGGTTTGTACTTTGATTGATGAAAGTGAAGTATTAGAAGCCCAAGCAGCAGAAAGTAT
TGCAGAGGATCTACAAAAAGCCTTGCCGGTACTACGGATTGGTTTGATACATGGCAGAATGAAAGTGAGTGAAAAGCAAG
AAGTAATGAGGCAATTTAAAAATGCTGAATTGAATTTGTTGGTTGCTACAACAGTAATTGAAGTCGGGGTTGATGTACCT
AATGCGAGTTTAATGATTATTGAAAATGCGGAACGATTAGGTTTGGCACAATTACATCAATTGCGTGGTCGGGTTGGGCG
TGGTAGTACGGCATCCTATTGTGTTTTAATGTATAAATCACCTTTGAGTAAAGTGTCGAGAAAACGTTTAGAAGTAATGC
GTTCAAGTCAAGATGGCTTCTTTATTTCTGAGCAAGATTTAGAAATTCGTGGACCGGGAGAAGTTTTAGGTACCAAACAG
ACGGGTGTTGCAGAGTTTAAAGTGGCTGATTTAATACGAGATCGTAAAATGCTGCCTACTGTTCAACATTATGCCCGTCT
ATTAATTACACGATCTCCAAAGTTAGCAGATGACCTCATTCAGCGTTGGCTTAAACATAAAGAAATTTATACCAATGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(291-405)

RecG wedge domain (RecG_wedge)

(15-171)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z000

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.741

97.403

0.475
  recG Bacillus subtilis subsp. subtilis str. 168

38.981

96.248

0.375
  recG/mmsA Streptococcus pneumoniae R6

38.681

96.248

0.372
  recG/mmsA Streptococcus pneumoniae R36A

38.681

96.248

0.372