Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A3217_RS08030 Genome accession   NZ_CP014991
Coordinates   1685465..1686295 (+) Length   276 a.a.
NCBI ID   WP_066389426.1    Uniprot ID   -
Organism   Helicobacter himalayensis strain YS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1680465..1691295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3217_RS08000 - 1680999..1681313 (+) 315 WP_066389416.1 thioredoxin family protein -
  A3217_RS08005 modA 1681521..1682258 (+) 738 WP_231860232.1 molybdate ABC transporter substrate-binding protein -
  A3217_RS08010 - 1682280..1682792 (+) 513 WP_066389420.1 hypothetical protein -
  A3217_RS08015 modB 1682849..1683511 (+) 663 WP_082807982.1 molybdate ABC transporter permease subunit -
  A3217_RS08020 - 1683521..1684408 (+) 888 WP_066389424.1 ABC transporter ATP-binding protein -
  A3217_RS08025 - 1684487..1685410 (+) 924 WP_231860233.1 divergent polysaccharide deacetylase family protein -
  A3217_RS08030 dprA 1685465..1686295 (+) 831 WP_066389426.1 DNA-processing protein DprA Machinery gene
  A3217_RS08035 ruvX 1686343..1686753 (+) 411 WP_066389813.1 Holliday junction resolvase RuvX -
  A3217_RS08040 - 1686757..1687398 (-) 642 WP_066389427.1 toxin-antitoxin system YwqK family antitoxin -
  A3217_RS08045 dnaE 1687561..1691256 (+) 3696 WP_082807983.1 DNA polymerase III subunit alpha -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30645.51 Da        Isoelectric Point: 8.7537

>NTDB_id=175822 A3217_RS08030 WP_066389426.1 1685465..1686295(+) (dprA) [Helicobacter himalayensis strain YS1]
MQVSQNSQNVQNKKTHSNLSFARLDSIPQSLQALPKPPKELFYSGNLKLLESPIKIAIVGTRAPNPYTKQFCAMLASEIA
KAGGVVVSGGALGVDIIAHRASLPNTIMFSPSSLDIIYPKSNTQTIAQIMQQGLILSEYAQNYQPHKFSFLERNRLVVGL
SDFVIIPQADLQSGSMQSARLCIESKKKLFVLPHRINESLGTQSLLARKFASAIYEIKDFIAEIFGVQDDKVQDPILEFC
KNVPSYEEALARFGLEILEYEMQGKILRENGIVRLC

Nucleotide


Download         Length: 831 bp        

>NTDB_id=175822 A3217_RS08030 WP_066389426.1 1685465..1686295(+) (dprA) [Helicobacter himalayensis strain YS1]
ATGCAAGTTTCCCAAAACTCACAAAATGTTCAAAATAAAAAAACGCATTCAAATCTTTCTTTTGCGCGTCTAGATTCTAT
TCCCCAATCATTGCAAGCTTTACCAAAACCACCAAAAGAGCTTTTTTACAGCGGGAATCTTAAACTTTTAGAATCCCCAA
TCAAAATTGCCATCGTAGGCACGCGCGCGCCAAATCCTTACACAAAACAATTTTGCGCAATGCTTGCTTCAGAAATTGCC
AAAGCTGGTGGCGTGGTGGTAAGCGGTGGCGCGCTAGGCGTGGATATTATCGCACACAGGGCGAGTTTGCCAAATACCAT
TATGTTTTCCCCCTCAAGCCTTGATATTATCTATCCAAAATCAAACACACAAACAATCGCGCAAATTATGCAACAAGGGC
TGATTTTAAGCGAATATGCGCAAAATTACCAACCGCATAAATTTAGCTTTTTAGAGCGTAATCGCCTTGTGGTGGGCTTG
AGCGATTTTGTCATTATCCCGCAGGCGGATTTGCAAAGTGGCTCGATGCAAAGCGCGAGGCTTTGTATTGAATCCAAAAA
GAAGCTTTTTGTCCTCCCACACCGCATAAATGAAAGTCTCGGCACGCAGAGCTTGCTTGCGCGAAAGTTTGCAAGCGCAA
TTTACGAGATTAAGGATTTCATTGCTGAAATTTTTGGTGTGCAAGATGATAAAGTGCAAGATCCGATTTTAGAATTTTGT
AAAAACGTCCCAAGTTATGAAGAAGCACTCGCGCGCTTTGGGCTAGAGATTTTAGAATACGAAATGCAGGGCAAAATTTT
GCGTGAAAATGGGATTGTGCGTTTATGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(15-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

53.409

95.652

0.511
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.639

84.42

0.402

Multiple sequence alignment