Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   A2I97_RS16820 Genome accession   NZ_CP014990
Coordinates   3385061..3385750 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain KD1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3380061..3390750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS16785 (A2I97_16240) - 3380259..3380741 (-) 483 WP_003151394.1 flagellar protein FlgN -
  A2I97_RS16790 (A2I97_16245) flgM 3380756..3381022 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  A2I97_RS16795 (A2I97_16250) - 3381092..3381511 (-) 420 WP_070082456.1 TIGR03826 family flagellar region protein -
  A2I97_RS16800 (A2I97_16255) comFC 3381585..3382274 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  A2I97_RS16805 (A2I97_16260) - 3382280..3382564 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  A2I97_RS16810 (A2I97_16265) comFA 3382622..3384007 (-) 1386 WP_109955204.1 DEAD/DEAH box helicase Machinery gene
  A2I97_RS16815 (A2I97_16270) - 3384115..3384963 (-) 849 WP_070082458.1 DegV family protein -
  A2I97_RS16820 (A2I97_16275) degU 3385061..3385750 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A2I97_RS16825 (A2I97_16280) degS 3385827..3386990 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  A2I97_RS16830 (A2I97_16285) - 3387213..3387860 (+) 648 WP_060657503.1 YigZ family protein -
  A2I97_RS16835 (A2I97_16290) - 3387865..3389079 (+) 1215 WP_070082459.1 LCP family protein -
  A2I97_RS16840 (A2I97_16295) - 3389169..3390245 (-) 1077 WP_070082460.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=175804 A2I97_RS16820 WP_003219701.1 3385061..3385750(-) (degU) [Bacillus velezensis strain KD1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=175804 A2I97_RS16820 WP_003219701.1 3385061..3385750(-) (degU) [Bacillus velezensis strain KD1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTAACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACATTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGAGGAATCGG
TGAATCACTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment