Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   A2I97_RS16800 Genome accession   NZ_CP014990
Coordinates   3381585..3382274 (-) Length   229 a.a.
NCBI ID   WP_198863951.1    Uniprot ID   -
Organism   Bacillus velezensis strain KD1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376585..3387274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS16765 (A2I97_16220) fliW 3376676..3377107 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  A2I97_RS16770 (A2I97_16225) - 3377137..3377706 (-) 570 WP_007407476.1 DUF6470 family protein -
  A2I97_RS16775 (A2I97_16230) flgL 3377797..3378714 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  A2I97_RS16780 (A2I97_16235) flgK 3378726..3380243 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  A2I97_RS16785 (A2I97_16240) - 3380259..3380741 (-) 483 WP_003151394.1 flagellar protein FlgN -
  A2I97_RS16790 (A2I97_16245) flgM 3380756..3381022 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  A2I97_RS16795 (A2I97_16250) - 3381092..3381511 (-) 420 WP_070082456.1 TIGR03826 family flagellar region protein -
  A2I97_RS16800 (A2I97_16255) comFC 3381585..3382274 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  A2I97_RS16805 (A2I97_16260) - 3382280..3382564 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  A2I97_RS16810 (A2I97_16265) comFA 3382622..3384007 (-) 1386 WP_109955204.1 DEAD/DEAH box helicase Machinery gene
  A2I97_RS16815 (A2I97_16270) - 3384115..3384963 (-) 849 WP_070082458.1 DegV family protein -
  A2I97_RS16820 (A2I97_16275) degU 3385061..3385750 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A2I97_RS16825 (A2I97_16280) degS 3385827..3386990 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25331.07 Da        Isoelectric Point: 8.6779

>NTDB_id=175802 A2I97_RS16800 WP_198863951.1 3381585..3382274(-) (comFC) [Bacillus velezensis strain KD1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARKSKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=175802 A2I97_RS16800 WP_198863951.1 3381585..3382274(-) (comFC) [Bacillus velezensis strain KD1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGAAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAACCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTTTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCGACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment