Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   A2I97_RS16810 Genome accession   NZ_CP014990
Coordinates   3382622..3384007 (-) Length   461 a.a.
NCBI ID   WP_109955204.1    Uniprot ID   -
Organism   Bacillus velezensis strain KD1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3377622..3389007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS16775 (A2I97_16230) flgL 3377797..3378714 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  A2I97_RS16780 (A2I97_16235) flgK 3378726..3380243 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  A2I97_RS16785 (A2I97_16240) - 3380259..3380741 (-) 483 WP_003151394.1 flagellar protein FlgN -
  A2I97_RS16790 (A2I97_16245) flgM 3380756..3381022 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  A2I97_RS16795 (A2I97_16250) - 3381092..3381511 (-) 420 WP_070082456.1 TIGR03826 family flagellar region protein -
  A2I97_RS16800 (A2I97_16255) comFC 3381585..3382274 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  A2I97_RS16805 (A2I97_16260) - 3382280..3382564 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  A2I97_RS16810 (A2I97_16265) comFA 3382622..3384007 (-) 1386 WP_109955204.1 DEAD/DEAH box helicase Machinery gene
  A2I97_RS16815 (A2I97_16270) - 3384115..3384963 (-) 849 WP_070082458.1 DegV family protein -
  A2I97_RS16820 (A2I97_16275) degU 3385061..3385750 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A2I97_RS16825 (A2I97_16280) degS 3385827..3386990 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  A2I97_RS16830 (A2I97_16285) - 3387213..3387860 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52630.09 Da        Isoelectric Point: 10.2378

>NTDB_id=175803 A2I97_RS16810 WP_109955204.1 3382622..3384007(-) (comFA) [Bacillus velezensis strain KD1]
MSEGASEFSEVRDFFYGRHLLRAEIPFSEHRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=175803 A2I97_RS16810 WP_109955204.1 3382622..3384007(-) (comFA) [Bacillus velezensis strain KD1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGAGCTGAGATACCGTT
TTCAGAACATCGCATCAACCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTTTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCAGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACCGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGGCTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGAATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAAGGCGTGCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment