Detailed information NTG0175296

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AYO71_RS22885
• Genome accession: NZ_CP014947
• Coordinates: 5102942..5105176 (-)
• Length: 744 a.a.
• NCBI ID: WP_041479459.1
• Uniprot ID: -
• Organism: Pseudomonas koreensis strain D26
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5097942..5110176

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYO71_RS22850 (AYO71_22850)	murB	5098320..5099339 (-)	1020	WP_041479454.1	UDP-N-acetylmuramate dehydrogenase	-
AYO71_RS22855 (AYO71_22855)	-	5099336..5099800 (-)	465	WP_041479455.1	low molecular weight protein-tyrosine-phosphatase	-
AYO71_RS22860 (AYO71_22860)	kdsB	5099800..5100564 (-)	765	WP_041479456.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AYO71_RS22865 (AYO71_22865)	-	5100561..5100746 (-)	186	WP_003179363.1	Trm112 family protein	-
AYO71_RS22870 (AYO71_22870)	lpxK	5100770..5101780 (-)	1011	WP_041479457.1	tetraacyldisaccharide 4'-kinase	-
AYO71_RS22875 (AYO71_22875)	-	5101780..5102208 (-)	429	WP_041479458.1	ExbD/TolR family protein	-
AYO71_RS22880 (AYO71_22880)	exbB	5102205..5102840 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AYO71_RS22885 (AYO71_22885)	comA	5102942..5105176 (-)	2235	WP_041479459.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AYO71_RS22890 (AYO71_22890)	-	5105313..5105831 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
AYO71_RS22895 (AYO71_22895)	-	5105971..5106750 (-)	780	WP_039760202.1	ABC transporter permease	-
AYO71_RS22900 (AYO71_22900)	-	5106747..5107679 (-)	933	WP_041479460.1	ABC transporter ATP-binding protein	-
AYO71_RS22905 (AYO71_22905)	-	5107813..5108436 (-)	624	WP_041479461.1	glutathione S-transferase family protein	-
AYO71_RS22910 (AYO71_22910)	-	5108480..5109139 (-)	660	WP_041479462.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81910.07 Da
• Isoelectric Point: 9.9157

>NTDB_id=175296 AYO71_RS22885 WP_041479459.1 5102942..5105176(-) (comA) [Pseudomonas koreensis strain D26]
MRTGMMALAVGLLAPVFLPALPPVGGLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAISWWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLI
WPPQERIEERRADVWQIDVGQGLAILVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=175296 AYO71_RS22885 WP_041479459.1 5102942..5105176(-) (comA) [Pseudomonas koreensis strain D26]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTGGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTCGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTTTGCCGCAACACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCGTCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAATAGTGGTGAGCGATGGCGTCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTGGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCTTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTCGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCGGCGCTGGTGCTTGGCGACGGTTCGGGGCTGAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGACAGCACATCGGTTTGCTGGCGGCTGTGATGTATCTGCTG
GTCGCAGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCCTGGTTGCCGTGGGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTATTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGCTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTTGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCGTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTTCATGGTGGGCTTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCAATGCGTCCGTTGGGCTGGCCGCTGCTGTTGCTTTTGATA
TGGCCGCCTCAAGAGCGAATAGAAGAAAGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTCTTGT
GCGCACGCGACATCACGCATTGCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGAGTGGTATTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCGCTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAACCCGAAGCGGTACTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTTGCGCGCTATCGCAAACAGGGCCTGCGCATCTACGACAGCGCCGAACAAGGTGCCATTCATTTGCAACTG
GGCAGCTTCAAGCCGCCGTGGACGATGCGGCAACAGCGGCGTTTCTGGCGCGATCCACCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (25-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.726	96.64	0.606
comA	Ralstonia pseudosolanacearum GMI1000	35.897	100	0.376