Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AYO71_RS22880 Genome accession   NZ_CP014947
Coordinates   5102205..5102840 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas koreensis strain D26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5097205..5107840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYO71_RS22845 (AYO71_22845) - 5097550..5098020 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  AYO71_RS22850 (AYO71_22850) murB 5098320..5099339 (-) 1020 WP_041479454.1 UDP-N-acetylmuramate dehydrogenase -
  AYO71_RS22855 (AYO71_22855) - 5099336..5099800 (-) 465 WP_041479455.1 low molecular weight protein-tyrosine-phosphatase -
  AYO71_RS22860 (AYO71_22860) kdsB 5099800..5100564 (-) 765 WP_041479456.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AYO71_RS22865 (AYO71_22865) - 5100561..5100746 (-) 186 WP_003179363.1 Trm112 family protein -
  AYO71_RS22870 (AYO71_22870) lpxK 5100770..5101780 (-) 1011 WP_041479457.1 tetraacyldisaccharide 4'-kinase -
  AYO71_RS22875 (AYO71_22875) - 5101780..5102208 (-) 429 WP_041479458.1 ExbD/TolR family protein -
  AYO71_RS22880 (AYO71_22880) exbB 5102205..5102840 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AYO71_RS22885 (AYO71_22885) comA 5102942..5105176 (-) 2235 WP_041479459.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AYO71_RS22890 (AYO71_22890) - 5105313..5105831 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  AYO71_RS22895 (AYO71_22895) - 5105971..5106750 (-) 780 WP_039760202.1 ABC transporter permease -
  AYO71_RS22900 (AYO71_22900) - 5106747..5107679 (-) 933 WP_041479460.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=175295 AYO71_RS22880 WP_016771007.1 5102205..5102840(-) (exbB) [Pseudomonas koreensis strain D26]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=175295 AYO71_RS22880 WP_016771007.1 5102205..5102840(-) (exbB) [Pseudomonas koreensis strain D26]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGATATTTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGGATTCCAGCGGTATTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTAGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment