Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BTN44_RS03970 Genome accession   NZ_CP018629
Coordinates   725415..726017 (+) Length   200 a.a.
NCBI ID   WP_000271544.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 720415..731017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTN44_RS03930 (BTN44_03910) - 720497..720616 (+) 120 WP_000840602.1 hypothetical protein -
  BTN44_RS03935 (BTN44_03915) mreC 720816..721658 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  BTN44_RS03940 (BTN44_03920) mreD 721658..722189 (+) 532 Protein_710 rod shape-determining protein MreD -
  BTN44_RS03945 (BTN44_03925) rplU 722356..722664 (+) 309 WP_000457385.1 50S ribosomal protein L21 -
  BTN44_RS03950 (BTN44_03930) - 722670..722990 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  BTN44_RS03955 (BTN44_03935) rpmA 723002..723286 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  BTN44_RS03960 (BTN44_03940) obgE 723641..724933 (+) 1293 WP_000496100.1 GTPase ObgE -
  BTN44_RS03965 (BTN44_03945) - 724946..725401 (+) 456 WP_000368902.1 ACT domain-containing protein -
  BTN44_RS03970 (BTN44_03950) ruvA 725415..726017 (+) 603 WP_000271544.1 Holliday junction branch migration protein RuvA Machinery gene
  BTN44_RS03975 (BTN44_03955) ruvB 726049..727053 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BTN44_RS03980 (BTN44_03960) queA 727055..728080 (+) 1026 WP_001019171.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BTN44_RS03985 (BTN44_03965) tgt 728103..729242 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  BTN44_RS03990 (BTN44_03970) yajC 729261..729521 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22236.42 Da        Isoelectric Point: 6.2380

>NTDB_id=175262 BTN44_RS03970 WP_000271544.1 725415..726017(+) (ruvA) [Staphylococcus aureus strain MRSA107]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLHGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=175262 BTN44_RS03970 WP_000271544.1 725415..726017(+) (ruvA) [Staphylococcus aureus strain MRSA107]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGCATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae R6

45.226

99.5

0.45
  ruvA Streptococcus pneumoniae D39

45.226

99.5

0.45
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.211

99.5

0.42

Multiple sequence alignment