Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AYR58_RS04250 | Genome accession | NZ_CP014936 |
| Coordinates | 849448..849969 (+) | Length | 173 a.a. |
| NCBI ID | WP_014214545.1 | Uniprot ID | G8PE86 |
| Organism | Pediococcus claussenii strain TMW 2.54 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 844448..854969
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYR58_RS04240 (AYR58_04235) | gyrA | 846485..848929 (+) | 2445 | WP_231952014.1 | DNA gyrase subunit A | - |
| AYR58_RS04245 (AYR58_04240) | rpsF | 849108..849398 (+) | 291 | WP_014214544.1 | 30S ribosomal protein S6 | - |
| AYR58_RS04250 (AYR58_04245) | ssb | 849448..849969 (+) | 522 | WP_014214545.1 | single-stranded DNA-binding protein | Machinery gene |
| AYR58_RS04255 (AYR58_04250) | rpsR | 849989..850225 (+) | 237 | WP_014214546.1 | 30S ribosomal protein S18 | - |
| AYR58_RS04260 (AYR58_04255) | - | 850419..852422 (+) | 2004 | WP_014214547.1 | DHH family phosphoesterase | - |
| AYR58_RS04265 (AYR58_04260) | rplI | 852429..852881 (+) | 453 | WP_014214548.1 | 50S ribosomal protein L9 | - |
| AYR58_RS04270 (AYR58_04265) | dnaB | 852905..854302 (+) | 1398 | WP_014214549.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19043.53 Da Isoelectric Point: 4.4862
>NTDB_id=175201 AYR58_RS04250 WP_014214545.1 849448..849969(+) (ssb) [Pediococcus claussenii strain TMW 2.54]
MINRTVLVGRLTRDPELRYTGSGAAVVSFTLAVNRQFTNQQGEREADFINCVMWRKSAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVADNFSLLESRSQSEQRQSNEGGFSQPAPSNNNQSSGNNNPFDAGQNSNGAQQPSSNPNDPFADG
GQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVSFTLAVNRQFTNQQGEREADFINCVMWRKSAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVADNFSLLESRSQSEQRQSNEGGFSQPAPSNNNQSSGNNNPFDAGQNSNGAQQPSSNPNDPFADG
GQSIDISDDDLPF
Nucleotide
Download Length: 522 bp
>NTDB_id=175201 AYR58_RS04250 WP_014214545.1 849448..849969(+) (ssb) [Pediococcus claussenii strain TMW 2.54]
ATGATTAACCGAACAGTACTCGTTGGACGCTTAACACGAGATCCTGAGTTACGATACACAGGCAGTGGCGCAGCTGTTGT
TTCTTTCACACTTGCTGTTAACCGGCAATTCACTAACCAACAAGGTGAACGTGAAGCCGATTTTATTAACTGCGTAATGT
GGAGAAAGTCAGCTGAAAACTTTGCTAATTTTACTCGCAAAGGTTCATTAGTGGGAATTGACGGCCGTATTCAAACGCGT
AACTACGAAAACCAACAAGGTCAACGTGTTTATGTTACTGAAGTAGTTGCCGATAATTTCTCACTTCTTGAATCTCGTTC
ACAATCTGAACAACGTCAGAGTAACGAAGGCGGATTTAGTCAGCCTGCCCCTTCTAACAACAATCAATCGTCAGGTAATA
ACAATCCATTTGACGCGGGTCAGAACAGTAATGGTGCACAACAACCTAGTTCTAATCCGAATGATCCATTTGCGGATGGT
GGTCAATCGATTGATATTTCTGATGATGATTTACCATTCTAA
ATGATTAACCGAACAGTACTCGTTGGACGCTTAACACGAGATCCTGAGTTACGATACACAGGCAGTGGCGCAGCTGTTGT
TTCTTTCACACTTGCTGTTAACCGGCAATTCACTAACCAACAAGGTGAACGTGAAGCCGATTTTATTAACTGCGTAATGT
GGAGAAAGTCAGCTGAAAACTTTGCTAATTTTACTCGCAAAGGTTCATTAGTGGGAATTGACGGCCGTATTCAAACGCGT
AACTACGAAAACCAACAAGGTCAACGTGTTTATGTTACTGAAGTAGTTGCCGATAATTTCTCACTTCTTGAATCTCGTTC
ACAATCTGAACAACGTCAGAGTAACGAAGGCGGATTTAGTCAGCCTGCCCCTTCTAACAACAATCAATCGTCAGGTAATA
ACAATCCATTTGACGCGGGTCAGAACAGTAATGGTGCACAACAACCTAGTTCTAATCCGAATGATCCATTTGCGGATGGT
GGTCAATCGATTGATATTTCTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
69.54 |
100 |
0.699 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.272 |
0.37 |